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Identification of radiation-sensitive genes as biomarkers for biodosimetry: an ex vivo analysis of TNFRSF10B, ZMAT3, POLH, and PLK2 in human blood samples.

BACKGROUND: Humans are exposed to ionizing radiation (IR), which causes direct and indirect DNA damage. Biodosimetry is a critical component of clinical care following radiation exposure, enabling accurate assessment and mitigation of health effects. The present study was conducted to investigate the ex vivo expression of the genes TNFRSF10B, ZMAT3, PLK2, and POLH in human peripheral blood samples exposed to X-radiation at doses of 0, 0.5, 2, and 4 Gy at 0, 4, 24, and 48 hours post-exposure. Investigating gene expression dynamics through biodosimetry is a novel approach that may provide insights into gene-specific responses, potentially enhancing the accuracy and sensitivity of radiation dose assessment. MATERIALS AND METHODS: Peripheral blood samples were collected from five healthy volunteers and exposed to 0, 0.5, 2, or 4 Gy radiation with a 6 MV linear accelerator. Following the extraction of RNA and cDNA synthesis, gene expression analysis via qRT&#x2012;PCR was performed. These genes were normalized against the housekeeping gene &#x3b2;-actin, and the &#x394;&#x394;Ct method was used for statistical analysis of gene expression. The data were subjected to statistical analysis, and the level of significance (p < 0.05) was determined to test the effects of dose and time on gene expression. RESULTS: The expression of the TNFRSF10B, ZMAT3, POLH, and PLK2 genes was markedly dose- and time-dependent in response to X-ray radiation in vitro. Whole-blood samples irradiated at doses of 0, 0.5, 2, and 4 Gy and analyzed at four time points, 0, 4, 24, and 48 hours, respectively, revealed marked changes in the expression levels of the genes studied, revealing the mechanisms of the response at the cellular level to ionizing radiation. Although minor inter-individual variation in gene expression was observed, it did not significantly affect the overall trends, and the results remained statistically robust. CONCLUSION: These findings highlight a robust biodosimetry framework: TNFRSF10B demonstrated the highest diagnostic performance (AUC = 0.94; sensitivity = 98%; specificity = 75%; cut-off = 1.11), making it a highly reliable biomarker for radiation exposure. PLK2 also exhibited strong discriminative capacity (AUC = 0.84; sensitivity = 90%; specificity = 80%; cut-off =2.5), particularly for minimizing false positives. ZMAT3 (AUC = 0.78; sensitivity/specificity = 75%; cut-off = 3.21) showed balanced early-phase performance, whilePOLH (AUC = 0.73; sensitivity = 80%; specificity = 60%; cut-off = 1.10) may serve as a complementary marker. Collectively, these findings support a multi-gene expression approach for accurate biodosimetric assessment and improved triage following radiation exposure.

Humans

Biomarkers related to m6A and succinic acid metabolism in papillary thyroid carcinoma.

BACKGROUND: Studies have shown that m6A modification is related to the occurrence and development of papillary thyroid carcinoma (PTC). The disorder of succinic acid metabolism is associated with the occurrence and development of various tumors. However, there are few studies based on m6A and succinate metabolism-related genes (SMRGs) in PTC. METHODS: The TCGA-Thyroid carcinoma (THCA), GSE33630, 1159 SMRGs, and 23 m6A regulatory factors were collected from the online databases. Subsequently, the differentially expressed genes (DEGs) were selected between PTC (Tumor) and Normal samples. The overlapping genes among the DEGs, m6A, and SMRGs were applied to screen the biomarkers. Using the 3 machine-learning algorithms, the biomarkers were determined based on the overlapping genes. Next, the biomarkers were evaluated by the ROC curve and expression analysis in TCGA-THCA and GSE33630. Then, the overall survival (OS) differences were compared between the high-and low-expression biomarkers. Finally, immune infiltration analysis, molecular regulatory network, and drug prediction were performed based on the biomarkers. RESULTS: In TCGA-THCA, there were 2800 DEGs between and Normal samples, and then 7 overlapping genes were obtained. Importantly, ADK, TNFRSF10B, CYP7B1, FGFR2, and CPQ were determined as biomarkers with excellent diagnostic efficiency (AUC&#x2009;>&#x2009;0.7). In PTC samples, ADK and TNFRSF10B were high-expressed while CYP7B1, FGFR2, and CPQ were low-expressed. Especially, the high-expression groups of ADK had a better prognosis, while the high-expression groups of CYP7B1, FGFR2, and CPQ had a worse prognosis. Afterward, immune infiltration analysis found that 16 immune cells had infiltration differences between the Tumor and Normal samples. Finally, transcription factor SP1 could regulate CYP7B1 and TNFRSF10B. Moreover, Navitoclax was a potential drug for PTC patients. CONCLUSION: Overall, we described 5 biomarkers associated with adverse prognosis of PTC, including ADK, TNFRSF10B, CYP7B1, FGFR2, and CPQ. All these biomarkers were involved in succinate metabolism and m6A modification of RNA. This set of biomarkers should be explored further for their diagnostic value in PTC. Investigations into the mechanistic role of alteration of succinate metabolism and m6A modification of RNA pathways in the pathophysiology of PTC are warranted.

Humans

Large-Scale Plasma Proteomics Identifies Early Molecular Deviations and Improves Risk Prediction for Heart Failure Among Individuals With Obesity.

AIMS: Heart failure (HF) is a major global public health challenge, with obesity being one of its key risk factors. Although several HF risk prediction models have been developed in the general population, few are specifically tailored to individuals with obesity. This underscores the urgent need for precise biomarkers to improve individual risk stratification and enable personalized prevention strategies. We aimed to develop and validate a plasma proteomics-based protein risk score (PRS) to predict incident HF among individuals with obesity. MATERIALS AND METHODS: We analysed 9831 participants with obesity (BMI &#x2265;&#x2009;30&#x2009;kg/m2) from the UK Biobank with baseline measurements of 2911 circulating proteins and up to 16&#x2009;years of follow-up. Multivariable Cox regression identified proteins associated with incident HF after comprehensive covariate adjustment. A PRS was constructed using LASSO regression and evaluated in a held-out test set. Protein trajectories before HF onset were reconstructed using LOESS modelling. To enhance clinical feasibility, a minimal protein panel was identified using LightGBM with forward feature selection. RESULTS: A total of 727 participants developed HF during follow-up. Multivariable cox analyses identified 578 proteins significantly associated with HF. LASSO regression further selected 81 proteins to build the PRS, which showed a strong association with HF risk in both training (HR 3.57; 95% CI 3.19-4.00) and test cohorts (HR 2.45; 95% CI 2.20-2.74). Adding the PRS improved prediction beyond age and sex (&#x394;C&#x2009;=&#x2009;0.091) and beyond the Pooled Cohort Equations to Prevent Heart Failure (PCP-HF) model (&#x394;C&#x2009;=&#x2009;0.052), with consistent gains in NRI and IDI. Proteomic deviations were detectable up to 16&#x2009;years before diagnosis. A four-protein panel (GDF15, NT-proBNP, TNFRSF10B, CTHRC1) achieved robust discrimination (AUC 0.789), outperforming NT-proBNP alone (AUC 0.695) and complementing the PCP-HF model (combined AUC 0.803). DISCUSSION: Large-scale plasma proteomics substantially improves HF risk prediction in individuals with obesity and reveals long-standing molecular alterations preceding clinical onset. A simplified four-protein panel maintains robust predictive accuracy and provides a practical approach for the early detection and targeted prevention of obesity-related HF.

Humans