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At least 19 recordsLinked to original sources

PubMed2026

Systematic Approach for Compound Angus Populations Revealing Positional Candidate Genes and Improving Prediction Accuracy in Carcass Traits.

Carcass traits, which reflect growth performance and muscle development, are economically important in beef cattle, yet their genetic determinants remain poorly characterized. Both single-population Genome-wide association studies (GWAS) methods, such as BLINK, and cross-population meta-analysis approaches are widely used to identify genetic variants, yet their comparative performance in genomic prediction for complex traits in structured populations remains underexplored. Few studies have directly compared these methods in genomic prediction. To address this gap, this study aims to (i) identify positional candidate genes associated with carcass traits and (ii) evaluate the context-dependent advantages of Covariate Adjustment (CA) and meta in genomic prediction. In this study, we analyzed carcass weight (CW), live weight (LW), and dressing percentage (DP) in 279 crossbred Angus cattle genotyped with the PHR0105_Bt140K_v1.0 SNP chip. GWAS was performed on the full population using BLINK, and results from three subpopulations were combined via meta-analysis, with significance thresholds for both approaches determined by a shuffle-based method. Candidate genes located within ±10 kb of significant SNPs were associated with different carcass traits, including STRIT1, SEL1L3, NOC4L and ANK1 for DP; SNCA and DNAH5 for CW; and GYPC, GPR158, and GUCY1A1 for LW. Prediction accuracy under MAS and MABLUP showed meta slightly outperformed BLINK in MAS, while BLINK was better with covariate adjustment; after incorporating kinship in MABLUP, meta achieved higher accuracy and population partitioning was negligible. Overall, MABLUP yielded the highest accuracy (0.52-0.79) versus MAS (0.37-0.54) in all traits. These findings provide a methodological basis for selecting appropriate GWAS strategies in structured populations and highlight candidate genes.

GS↗

PubMed1992

Two-, three-, and four-breed rotational crossbreeding of beef cattle: carcass traits.

Carcass data from 1,494 straightbred and rotational crossbred steers were collected over four generations. Mating systems included straightbreds (Angus [A], Brahman [B], Charolais [C], and Hereford [H]); two-breed rotations (A-B, C-B, and H-B); three-breed rotations (A-B-C, A-B-H, and B-C-H); and a four-breed rotation (A-B-C-H). Steers were randomly allocated to one of four postweaning treatments that varied in length of grazing and feeding periods. Treatment and breed group (four straightbreds and seven rotational combinations) significantly influenced hot carcass weight (HCWT), retail yield (RY), longissimus muscle area (LM), fat thickness (FT), marbling score (MS), USDA quality grade (QG), and Warner-Bratzler shear force (WBS). Feeding for longer periods resulted in greater (P < .05) HCWT, RY, FT, and MS, higher QG, and lower (P < .05) WBS values. Among the straightbreds, C was heavier and larger for HCWT, RY, and LM (P < .01), whereas A and H had greater (P < .01) FT and MS. The B was similar to H for HCWT, RY, and LM and to C for FT but ranked last (P < .01) for MS and WBS. Three- and four-breed rotational mating systems were superior (P < .05) to the two-breed rotation for HCWT, RY, and LM but were similar for FT, MS, and WBS. Rotational combinations exceeded (P < .05) the straightbreds for all carcass traits except MS.

Adipose Tissue↗

PubMed2006

The effects of high levels of supplemental copper on the serum lipid profile, carcass traits, and carcass composition of goat kids.

This experiment was conducted to determine the effect of high levels of supplemental Cu (as (CuSO4).5H2O) on the serum lipid profile and carcass traits of goat kids. Fifteen Boer x Spanish wether goat kids (BW = 21.3 +/- 0.7 kg) were housed in individual pens and were assigned randomly to 1 of 3 treatments. Treatments consisted of 1) control (no additional supplemental Cu), 2) 100 mg of Cu/d, and 3) 200 mg of Cu/d. Copper sulfate was placed in gelatin capsules and inserted into the esophagus via a balling gun before the morning feeding. Animals were fed a high-concentrate (70:30 grain:hay) diet for 112 d. Serum lipid profile was determined on d 14 and 112, and BW was recorded after 4-h withdrawals from feed and water. After 112 d, animals were slaughtered, and carcass traits were measured. The left half of 12 carcasses and 9th to 11th rib sections from the right side of 15 carcasses were dissected into separable soft tissue and bone portions. The soft tissue portion was analyzed for moisture, ether extract, CP, and ash. Average daily feed intake decreased (linear; P = 0.05), and G:F increased (quadratic; P = 0.02) in the 100 mg of Cu/d group. Serum cholesterol and triglycerides did not change (P > 0.10); however, NEFA decreased (linear; P = 0.01) as supplemental Cu increased. No differences were observed (P > 0.10) in HCW, chilled carcass weight, or kidney and pelvic fat; however, 12th rib fat (linear; P = 0.01) and adjusted fat thickness (linear; P = 0.03) decreased as Cu supplementation increased. No differences (P > 0.10) in LM area were observed; however, percentage of boneless closely trimmed retail cuts increased (linear; P = 0.04) as Cu supplementation increased. The moisture (%) of the 9th to 11th rib sections increased (linear; P = 0.03), ether extract (%) decreased (linear; P = 0.02), and CP and ash (%) tended to increase (linear; P = 0.09 and 0.06, respectively) as Cu supplementation increased. Carcass composition measured using the left half of the carcass confirmed the values obtained through the 9th to 11th rib sections. Results of this study indicate that supplemental Cu can alter the serum lipid profile, carcass characteristics, and carcass composition of goat kids.

Animal Feed↗

PubMed2002

Genetic and environmental parameters for steer ultrasound and carcass traits.

Carcass measurements for weight, longissimus muscle area, 12-13th-rib fat thickness, and marbling score, as well as for live animal measurements of weight at the time of ultrasound, ultrasound longissimus muscle area, ultrasound 12-13th-rib fat thickness, and ultrasound-predicted percentage ether extract were taken on 2,855 Angus steers. The average ages for steers at the time of ultrasound and at slaughter were 391 and 443 d, respectively. Genetic and environmental parameters were estimated for all eight traits in a multivariate animal model. In addition to a random animal effect, the model included a fixed effect for contemporary group and a covariate for measurement age. Heritabilities for carcass weight, carcass longissimus muscle area, carcass fat thickness, carcass marbling score, ultrasound weight, ultrasound longissimus muscle area, ultrasound fat thickness, and ultrasound-predicted percentage ether extract were 0.48, 0.45, 0.35, 0.42, 0.55, 0.29, 0.39, and 0.51, respectively. Genetic correlations between carcass and ultrasound longissimus muscle area, carcass and ultrasound fat thickness, carcass marbling score and ultrasound-predicted percentage ether extract, and carcass and ultrasound weight were 0.69, 0.82, 0.90, and 0.96, respectively. Additional estimates were derived from a six-trait multivariate animal model, which included all traits except those pertaining to weight. This model included a random animal effect, a fixed effect for contemporary group, as well as covariates for both measurement age and weight. Heritabilities for carcass longissimus muscle area, carcass fat thickness, carcass marbling score, ultrasound longissimus muscle area, ultrasound fat thickness, and ultrasound-predicted percentage ether extract were 0.36, 0.39, 0.40, 0.17, 0.38, and 0.49, respectively. Genetic correlations between carcass and ultrasound longissimus muscle area, carcass and ultrasound fat thickness, and carcass marbling and ultrasound-predicted percentage ether extract were 0.58, 0.86, and 0.94, respectively. The high, positive genetic correlations between carcass and the corresponding real-time ultrasound traits indicate that real-time ultrasound imaging is an alternative to carcass data collection in carcass progeny testing programs.

Adipose Tissue↗

PubMed2005

A directed search in the region of GDF8 for quantitative trait loci affecting carcass traits in Texel sheep.

A directed search for QTL affecting carcass traits was carried out in the region of growth differentiation factor 8 (GDF8, also known as myostatin) on ovine chromosome 2 in seven Texel-sired half-sib families totaling 927 progeny. Weights were recorded at birth, weaning, ultrasound scanning, and slaughter. Ultrasonic measures of LM cross-sectional dimensions and s.c. fat above the LM were made, with the same measurements made on the LM after slaughter. Following slaughter, linear measurements of carcass length and width were made on all carcasses, and legs and loins from 540 lambs were dissected. Genotyping was carried out using eight microsatellite markers from FCB128 to RM356 on OAR 2 and analyzed using Haley-Knott regression. There was no evidence for QTL for growth rates or linear carcass traits. There was some evidence for QTL affecting LM dimensions segregating in some sire families, although it was not consistent between ultrasound and carcass measures of the same traits. There was strong and consistent evidence for a QTL affecting muscle and fat traits in the leg that mapped between markers BM81124 and BULGE20 for the four sires that were heterozygous in this region, but not for the three sires that were homozygous. The size of the effect varied across the four sires, ranging from 0.5 to 0.9 of an adjusted SD for weight-adjusted leg muscle traits, and ranging from 0.6 to 1.2 of an adjusted SD for weight-adjusted leg fat traits. The clearest effect shown was for multivariate analysis combining all leg muscle and fat traits analyzed across sires, where the -log(10) probability was 14. Animals carrying the favorable haplotype had 3.3% more muscle and 9.9% less fat in the leg relative to animals carrying other haplotypes. There was evidence for a second peak in the region of marker TEXAN2 for one sire group. It seems that a QTL affecting muscle and fat traits exists within the New Zealand Texel population, and it maps to the region of GDF8 on OAR2.

Adipose Tissue↗

PubMed1999

Whole genome scan in chickens for quantitative trait loci affecting carcass traits.

An experiment was conducted to enable quantitative trait loci (QTL) mapping for carcass traits. The population consisted of 10 full-sib families originating from a cross between male and female founders chosen from two different outcross broiler lines. Founder animals, parents, offspring, and grandoffspring are denoted as generation (G) 0, 1, 2, and 3 animals, respectively. Microsatellite marker genotypes were collected on G1 and G2 animals. Phenotypic observations were collected on G3 animals. Recorded traits were BW at 48 d, carcass weight, carcass percentage, breast meat color, and leg score. Average adjusted progeny trait values were calculated for each G2 animal and for each trait after adjusting phenotypic observations on G3 animals for fixed effects, covariables, the additive genetic contribution of the other parent, and differences between sexes. The average adjusted progeny trait values were used as the dependent variable in the QTL analysis. A QTL analysis was undertaken by modeling the segregation from G1 to G2, using a full-sib across family regression interval mapping approach. In total, 27 autosomal linkage groups covered with 420 markers were analyzed. Genomewise significance thresholds were derived using the permutation test and a Bonferroni correction. Two QTL, affecting two of the five analyzed traits, exceeded suggestive linkage. The most significant QTL was located on Chromosome 1 at 466 cM and showed an effect on carcass percentage. The other QTL, which affected meat color, was located on Chromosome 2 and gave a peak at 345 and 369 cM.

Animals↗

PubMed2002

Detection of quantitative trait loci for carcass traits in the pig by using AFLP.

For evaluation of the suitability of Amplified Fragment Length Polymorphism (AFLP) for detection of quantitative trait loci in farm animals, a combination of AFLP and selective genotyping has been applied as a rapid screening method for marker-QTL associations. Focusing on loci affecting eye muscle area, six extreme discordant sib pairs were selected from a Duroc x Berlin Miniature Pig F2 experimental cross and examined by using 48 AFLP primer combinations. Two prominent AFLP markers were converted into simple codominant PCR markers ( STS-Bo1 and STS-Bo3) and assigned to Sscr4 by physical and linkage mapping. Single marker analysis indicated association of the STS markers with a putative QTL influencing eye muscle area. Interval mapping confirmed the presence of a significant QTL for eye muscle area (Pgenomewide < 0.01) on the Sscr4, with STS-Bo1 being the closer marker. At the same location, significant effects (Pgenomewide < 0.01) on carcass length and backfat thickness were also detected. Our results demonstrate the capability of the combination of AFLP analysis and selective genotyping as a method for detection of genome regions containing QTL in livestock.

Animals↗

PubMed2006

Mapping of quantitative trait loci for carcass traits in a Japanese Black (Wagyu) cattle population.

To detect quantitative trait loci (QTL) that influence economically important traits in a purebred Japanese Black cattle population, we performed a preliminary genome-wide scan using 187 microsatellite markers across a paternal half-sib family composed of 258 offspring. We located six QTL at the 1% chromosome-wise level on bovine chromosomes (BTA) 4, 6, 13, 14 and 21. A second screen of these six QTL regions using 138 additional paternal offspring half-sib from the same sire, provided further support for five QTL: carcass weight on BTA14 (22-39 cM), one for rib thickness on BTA6 (27-58 cM) and three for beef marbling score (BMS) on BTA4 (59-67 cM), BTA6 (68-89 cM) and BTA21 (75-84 cM). The location of QTL for subcutaneous fat thickness on BTA13 was not supported by the second screen (P > 0.05). We determined that the combined contribution of the three QTLs for BMS was 10.1% of the total variance. The combined phenotypic average of these three Q was significantly different (P < 0.001) from those of other allele combinations. Analysis of additional half-sib families will be necessary to confirm these QTL.

Animals↗

PubMed2004

Associations of polymorphisms in the Pit-1 gene with growth and carcass traits in Angus beef cattle.

The Pit-1 gene was studied as a candidate for genetic markers of growth and carcass traits. Angus beef cattle that were divergently selected for high- or low-blood serum IGF-I concentration were used in this study. The single-strand conformation polymorphism method was used to identify polymorphism in the Pit-1 gene including regions from intron 2 to exon 6. Two polymorphisms, Pit1I3H (HinfI) and Pit1I3NL (NlaIII), were detected in intron 3 of the Pit-1 gene. One polymorphism, Pit1I4N (BstNI), was found in intron 4, and a single nucleotide polymorphism, Pit1I5, was found in intron 5. The previously reported polymorphism in exon 6, Pit1E6H (HinfI), was also studied in 416 Angus beef cattle. Associations of the polymorphisms with growth traits, carcass traits, and IGF-I concentration were analyzed using a general linear model procedure. No significant associations were observed between these polymorphisms and growth and carcass traits.

Animals↗

PubMed1990

Performance of Hereford and two-breed rotational crosses of Hereford with Angus and Simmental cattle: II. Carcass traits of steers.

Calf carcass traits were evaluated for Simmental (S) x Hereford (H) and Angus (A) x H crosses in two-breed rotations and for straightbred H. Data were grouped into seven dam breed categories: straightbred Hereford (H), F1 S x H cows (SH), S x H cows of low percentage H (SHS), S x H cows of high percentage H (HSH), F1 A x H cows (AH), A x H cows of low percentage H (AHA) and A x H cows of high percentage H (HAH). Straightbred H and crossbred SH, AH, SHS and AHA cows were mated to H bulls, HSH cows were mated to S bulls and HAH cows were mated to A bulls. Calves from the S x H rotation produced heavier carcasses with less fat, lower quality grade, larger longissimus area and increased estimated cutability compared to A x H calves. Some significant intergenerational differences were observed within rotations, particularly within S x H. Calves from HSH cows mated to S bulls produced carcasses with less fat cover, lower quality grade, larger longissimus muscle area and higher estimated cutability compared to calves from SHS dams mated to H bulls. Within both rotations, evaluation of carcass weight per day of age indicated that postweaning ADG was lower for generations for which H was the sire breed. Carcass traits of calves from SHS, HSH, AHA and HAH dam breed groups from the last 3 yr of the study when calves were fed under two different postweaning management systems were evaluated in a separate analysis.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed2005

[Effects of FUT1 gene on meat quality and carcass traits in swine].

A total of 139 hybrid finishing pigs from Large White x Meishan were slaughtered at about 88kg body weight. Fourteen meat quality traits and 8 carcass traits were assayed for each pig. FUT1 gene was scored by PCR-RFLP. The values of meat pH and meat color for AA genotype pig were higher than those of AG genotype pig (P<0.05). Water holding capacity (WHC) of AA genotype pig was higher than that of AG genotype pig(91.02% VS 86.70%, P<0.05). Backfat at 6-7 vertebra (BV) and backfat at vertebra-lumbar (BVL) of AA genotype pig were lower than those of AG genotype pig 4.26 mm and 3.96 mm respectively (P<0.05). Meat factor of AA genotype pig was higher than that of AG genotype pig 3.31% (53.46% VS 50.15%, P<0.05). These results indicated that FUT1 gene had good genetic effects on pig meat quality and carcass traits.

Adipose Tissue↗

PubMed2004

Heritability estimates for carcass traits of cattle: a review.

We present estimates of heritability for carcass traits of cattle published in the scientific literature. Seventy-two papers published from 1962 to 2004, which reported estimates of heritability for carcass traits, were reviewed. The unweighted means of estimates of heritability for 14 carcass traits by slaughter end point (age, weight, and fat depth) were calculated. Among the three end points, carcass weight, backfat thickness, longissimus muscle area, and marbling score were the carcass traits with the most estimates of heritability (56 <or= n<or=66). The averages for these traits indicate that they are similarly and moderately heritable (0.40, 0.36, 0.40, and 0.37, respectively). However, heritability estimates for most traits varied greatly, which could be due to differences in breed groups, methods of estimation, effects in the model, number of records, measurement errors, sex, and management. Few studies have compared heritability estimates for carcass traits adjusted to different end points. Results from such studies have been inconsistent, although some studies revealed that heritability estimates for several carcass traits are sensitive to the covariate included in the model for the end point, implying that direct response to selection would be different for some traits depending on slaughter end point. The effect of different end points on estimates of heritability for many carcass traits has not been studied.

Animals↗

PubMed2006

Porcine OGN and ASPN: mapping, polymorphisms and use for quantitative trait loci identification for growth and carcass traits in a Meishan x Piétrain intercross.

The porcine orthologues of human chromosome HSA9q22.31 genes osteoglycin (OGN) and asporin (ASPN) were mapped to porcine chromosome SSC3 using linkage analysis and a somatic cell hybrid panel. This mapping was refined to SSC3q11 using fluorescence in situ hybridization. These results confirm the existence of a small conserved synteny group between SSC3 and HSA9. Polymorphisms were revealed in both genes, including a pentanucleotide microsatellite (SCZ003) in OGN and two single nucleotide polymorphisms (AM181682.1:g.780G>T and AM181682.1:g.825T>C) in ASPN. The two genes were included in a set of markers for quantitative trait loci (QTL) mapping on SSC3 in the Hohenheim Meishan x Piétrain F2 family. Major QTL for growth and carcass traits were centred in the ASPN-SW902 region.

Animals↗

PubMed2004

Quantitative trait loci analysis for growth and carcass traits in a half-sib family of purebred Japanese Black (Wagyu) cattle.

We used a half-sib family of purebred Japanese Black (Wagyu) cattle to locate economically important quantitative trait loci. The family was composed of 348 fattened steers, 236 of which were genotyped for 342 microsatellite markers spanning 2,664 cM of 29 bovine autosomes. The genome scan revealed evidence of 15 significant QTL (<5% chromosome-wise level) affecting growth and carcass traits. Of the 15 QTL, six QTL were significant at the 5% experiment-wise level and were located in bovine chromosomes (BTA) 4, 5, and 14. We analyzed these three chromosomes in more detail in the 348 steers, with an average marker interval of 1.2 cM. The second scan revealed that the same haplotype of the BTA 4 region (52 to 67 cM) positively affected LM area and marbling. We confirmed the QTL for carcass yield estimate on BTA 5 in the region of 45 to 54 cM. Five growth-related QTL located on BTA 14, including slaughter and carcass weights, were positively affected by the same region of the haplotype of BTA 14 (29-51 cM). These data should provide a useful reference for further marker-assisted selection in the family and positional cloning research. The research indicates that progeny design with moderate genotyping efforts is a powerful method for detecting QTL in a purebred half-sib family.

Animals↗

PubMed1999

Effects of growth type on carcass traits of pasture- or feedlot-developed steers.

Carcasses of 342 steers of known genetic backgrounds from four fundamentally different growth types were developed either on pasture or feedlot regimens to study differences in carcass traits. Growth types were large framed-late maturing (LL), intermediate framed-intermediate maturing (II), intermediate framed-early maturing (IE), and small framed-early maturing (SE). Five calves from each growth type were assigned to each regimen in each year of a 9-yr study. Eighteen steers were removed from the study because of accident or illness. Data collected were preslaughter shrunk BW (SBW); hot carcass weight (HCW); chilled carcass weight (CCW); dressing percentage (DRESS); fat thickness at the 12th and 13th-rib interface (FAT); percentage kidney, pelvic, and heart fat (KPH); longissimus muscle area (LMA); marbling score (MARB); quality grade (QG); and yield grade (YG). Differences in carcass traits reflected genetic differences among growth types. The LL steers had heavier BW, HCW, and CCW and larger LMA (P < .05) than steers of other growth types, regardless of development regimen. Among pasture-developed steer carcasses, IE and SE steers had higher (P < .05) MARB and QG than either LL or II steers. Carcasses of large framed-late maturing steers had the lowest (P < .05) MARB and QG of the growth types. Carcasses of the II, IE, and SE steers had a higher (P < .05) numerical value for YG than carcasses of the LL steers. Among the carcasses of the feedlot-developed steers, IE and SE steers had the highest (P < .05) MARB and QG. Carcasses from the IE and SE steers were fatter (P < .05) than those from LL or II steers. Carcasses of the LL steers had the lowest percentage of KPH of growth types developed in the feedlot. No difference was observed in KPH for carcasses of II, IE, and SE steers. The LL steer carcasses had the lowest numerical value for YG of all growth types. These data indicate that variation existed among carcass traits for the four growth types and that carcass traits influenced by fatness were greater and more attainable in the feedlot-developed steers using current methods of evaluation.

Animal Feed↗

PubMed2002

Estimates of parameters between direct and maternal genetic effects for weaning weight and direct genetic effects for carcass traits in crossbred cattle.

Estimates of heritabilities and genetic correlations were obtained for weaning weight records of 23,681 crossbred steers and heifers and carcass records from 4,094 crossbred steers using animal models. Carcass traits included hot carcass weight; retail product percentage; fat percentage; bone percentage; ribeye area; adjusted fat thickness; marbling score, Warner-Bratzler shear force and kidney, pelvic and heart fat percentage. Weaning weight was modeled with fixed effects of age of dam, sex, breed combination, and birth year, with calendar birth day as a covariate and random direct and maternal genetic and maternal permanent environmental effects. The models for carcass traits included fixed effects of age of dam, line, and birth year, with covariates for weaning and slaughter ages and random direct and maternal effects. Direct and maternal heritabilities for weaning weight were 0.4 +/- 0.02 and 0.19 +/- 0.02, respectively. The estimate of direct-maternal genetic correlation for weaning weight was negative (-0.18 +/- 0.08). Heritabilities for carcass traits of steers were moderate to high (0.34 to 0.60). Estimates of genetic correlations between direct genetic effects for weaning weight and carcass traits were small except with hot carcass weight (0.70), ribeye area (0.29), and adjusted fat thickness (0.26). The largest estimates of genetic correlations between maternal genetic effects for weaning weight and direct genetic effects for carcass traits were found for hot carcass weight (0.61), retail product percentage (-0.33), fat percentage (0.33), ribeye area (0.29), marbling score (0.28) and adjusted fat thickness (0.25), indicating that maternal effects for weaning weight may be correlated with genotype for propensity to fatten in steers.

Adipose Tissue↗

PubMed2006

Effect of gender on slaughter and carcass traits in Anatolian water buffalo.

This study determined the effect of gender on slaughter and carcass traits in Anatolian water buffalos reared under free range conditions in Turkey. Sixteen four-years-old Anatolian water buffalo were divided into two groups of eight males in one group and eight females in the other. The slaughter and carcass traits, carcass measurement, amount of worthy meat from each animal and phenotypic correlations among some carcass traits were determined. Chilling loss, slaughter weight and hot and cold carcass weights were 5.27%, 496.44 kg, 234.60 kg and 222.16 kg, respectively in males and 5.43%, 515.34 kg, 236.08 kg and 223.00 kg, respectively for females (P > 0.05). The ratio of skin and four leg weights (P < 0.05) and skin, head and the legs weights to the live-weight (P < 0.01) were found significantly higher in males than in female buffalos. In addition, from worthy meat, short loin was higher in males compared to females (P < 0.05). In this study, it is concluded that, generally carcass yield and amount of worthy meat in carcass tends to be higher in male water buffalo compared to females.

Animals↗

PubMed2006

Identification of trait loci affecting white meat percentage and other growth and carcass traits in commercial broiler chickens.

White meat is the most economically valuable part of a broiler chicken. Increasing white meat relative to overall body size (white meat percentage, WM%) makes a broiler, gram for gram, a more valuable animal. However, accurately measuring WM% requires removing the bird from the breeding flock. Identification of markers for genomic regions associated with WM% would allow direct genetic selection on breeders. The objective of the current study was to identify genomic regions affecting WM% and other growth and carcass traits in an F2 cross between 2 commercial broiler lines that differed in WM%. Two commercial lines were crossed to generate 5 F1 half-sib families of each reciprocal cross type. One male from each family was crossed with 3 females from each of the other families within each reciprocal cross type. Seven F2 half-sib families, totaling 430 F2 individuals, were analyzed. Microsatellite markers (n = 73) on the 11 largest chromosomes were analyzed for associations with various growth and carcass traits by least squares interval mapping using line-cross, half-sib, combined, and parent of origin models. Sixty-eight QTL were identified at the 5% chromosome-wise level, including 6 QTL affecting WM%. Ten QTL reached 5% genome-wise significance, including 1 WM% QTL on Gga 2. The current study identified genomic regions harboring QTL affecting WM% and other carcass and growth traits, which may be useful for direct genetic selection, and also identified putative imprinted QTL in the chicken. The advantage of using multiple statistical models was evident because QTL were identified with the combined and parent of origin models that were not identified with the line-cross or half-sib models.

Animals↗