Biomedical subjects

Dongqing Li

Publications and source records attributed to Dongqing Li.

7 recordsLinked to original sources

PubMed2024

Spatiotemporal single-cell roadmap of human skin wound healing.

Wound healing is vital for human health, yet the details of cellular dynamics and coordination in human wound repair remain largely unexplored. To address this, we conducted single-cell multi-omics analyses on human skin wound tissues through inflammation, proliferation, and remodeling phases of wound repair from the same individuals, monitoring the cellular and molecular dynamics of human skin wound healing at an unprecedented spatiotemporal resolution. This singular roadmap reveals the cellular architecture of the wound margin and identifies FOSL1 as a critical driver of re-epithelialization. It shows that pro-inflammatory macrophages and fibroblasts sequentially support keratinocyte migration like a relay race across different healing stages. Comparison with single-cell data from venous and diabetic foot ulcers uncovers a link between failed keratinocyte migration and impaired inflammatory response in chronic wounds. Additionally, comparing human and mouse acute wound transcriptomes underscores the indispensable value of this roadmap in bridging basic research with clinical innovations.

Humans↗

PubMed2003

Modeling of DNA hybridization kinetics for spatially resolved biochips.

The marriage of microfluidics with detection technologies that rely on highly selective nucleic acid hybridization will provide improvements in bioanalytical methods for purposes such as detection of pathogens or mutations and drug screening. The capability to deliver samples in a controlled manner across a two-dimensional hybridization detection platform represents a substantial technical challenge in the development of quantitative and reusable biochips. General theoretical and numerical models of heterogeneous hybridization kinetics are required in order to design and optimize such biochips and to develop a quantitative method for online interpretation of experimental results. In this work we propose a general kinetic model of heterogeneous hybridization and develop a technique for estimating the kinetic coefficients for the case of well-spaced, noninteracting surface-bound probes. The experimentally verified model is then incorporated into the BLOCS (biolab-on-a-chip simulation) 3D microfluidics finite element code and used to model the dynamic hybridization on a biochip surface in the presence of a temperature gradient. These simulations demonstrate how such a device can be used to discriminate between fully complementary and single-base-pair mismatched hybridization using fluorescence detection by interpretation of the unique spatially resolved intensity pattern. It is also shown how the dynamic transport of the targets is likely to affect the rate and location of hybridization as well as that, although nonspecific hybridization is present, the change in the concentration of hybridized targets over the sensor platform is sufficiently high to determine if a fully complementary match is present. Practical design information such as the optimum transport speed, target concentration, and channel height is presented. The results presented here will aid in the interpretation of results obtained with such a temperature-gradient biochip.

Biosensing Techniques↗

PubMed2003

Visualization and numerical modelling of microfluidic on-chip injection processes.

Sample injection processes accomplished using a microfluidic-cross chip are investigated experimentally and numerically. Fluorescent dye is employed to differentiate the sample solution from the pure buffer. Different sample geometries are achieved using different applied electric fields and dyes with different electrophoretic mobilities. Of particular interest here are concentration-dense samples with large axial extent (extending beyond the intersection). The ability to load and subsequently dispense these large axial extent samples is predicted numerically and verified experimentally by direct visualization. Containing more mass, larger samples exhibited lower concentration gradients, making them less sensitive to diffusion and well-suited to transport once dispensed. In the loading process, however, larger samples were found to be more sensitive to pressure effects than more focused samples. This was investigated by imaging sample geometries under various applied fields in the presence of a constant pressure gradient. Laplace pressure originating from differential meniscus curvatures in the reservoirs was found to be the most significant source of such pressure disturbances in these geometries.

Journal Article↗

PubMed2002

Theoretical studies of microfluidic dispensing processes.

The understanding of electrokinetic transport phenomena in microfluidic dispensers, an important component of biochips, is very important for designing and controlling biochips. A theoretical model to study the electrokinetic transport processes in microfluidic dispensers was developed in the work to study the controlling parameters for the dispensing process. The electrical field, the flow field, and the concentration field during dispensing processes were obtained by solving this theoretical model numerically. The effects of the electroosmotic mobility of the buffer solution, the diffusion coefficient and the electrophoretic mobility of the sample, the applied electrical field strength, and the channel size on the dispensing process are examined in this paper. The investigations show that optimal controlling parameter values can be found by using this model for dispensing any desired amount of the sample.

Journal Article↗

PubMed2002

Direct and indirect electroosmotic flow velocity measurements in microchannels.

As microfluidic technologies mature, increasingly complex solutions are employed, and accurate methods for the measurement of electroosmotic flow rates are becoming increasingly important. The methodologies of both a direct method and an indirect method of flow rate measurement are presented here. The direct method involves flow visualization using trace amounts of a caged fluorescent dye. The indirect method is based on the change in current that occurs when one solution in the microchannel is replaced by another. The results of concurrent and independent measurements of electroosmotic velocities of Tris-acetate with EDTA (TAE) and Tris-borate with EDTA (TBE) at 1x concentration in fused silica capillaries are presented. Although these buffers are commonly used in biological chemistry, these mobilities have not previously been reported. Strong agreement among data collected with both methods establishes confidence in the electroosmotic mobility values obtained and indicates that the current-based method, which requires less infrastructure than the direct method, can provide accurate flow rate measurements under these conditions. Constant electroosmotic mobilities of 4.90 x 10(-8) m(2) V(-1) s(-1) for TAE and 3.10 x 10(-8) m(2) V(-1) s(-1) for TBE were determined by tests in a range of electrical field strengths from 5 to 20 kV/m. A linear flow rate increase with applied field strength indicated that constant mobility and negligible Joule heating effects were present. Applicability and limitations of both the measurement methods and these buffers are discussed in the context of microfluidic applications.

Journal Article↗

PubMed2001

Streaming Potential and Streaming Current Methods for Characterizing Heterogeneous Solid Surfaces.

By monitoring changes in electrokinetic parameters, the streaming potential technique has been used as a method of characterizing heterogeneous surfaces, for example, due to protein adsorption. In general it is assumed that the change in the streaming potential is proportional to the degree of heterogeneity. In this study a simple model of the electrokinetic flow through heterogeneous slit channels has been developed with the goal of comparing the streaming potential and streaming current techniques and determining under what conditions the aforementioned proportionality assumption will produce erroneous results. The flow simulations have shown that, when the streaming potential induces significant flow impedance, a severe deviation from the linear assumption is observed. Since streaming current measurements are unaffected by electrokinetic flow effects, more consistent results are predicted and they are preferred for measurements made in small channels. Additionally it has been shown that the distribution of the heterogeneous coverage has a negligible effect on both the streaming potential and the streaming current in cases where the double-layer overlap is not significant. Copyright 2001 Academic Press.

Journal Article↗

PubMed2000

Determining zeta Potential and Surface Conductance by Monitoring the Current in Electro-osmotic Flow.

In this paper we have outlined a simple procedure for determining zeta potential, zeta(0), and surface conductance, lambda(s), based on current monitoring in electro-osmosis. In these experiments, the average velocity was determined by measuring the amount of time required to completely displace a solution by another solution in the capillary tube. The average velocity during electro-osmosis was found to be independent of capillary size, although it was dependent on the electrolyte concentration and applied electrical field. The measured values of the zeta potential, zeta(0), were found to be independent of capillary size and the applied field, while zeta(0) is strongly dependent on the electrolyte concentration. Calculations of the specific surface conductivity lambda(s) based on current measurements reveal a relationship between lambda(s) and capillary size, in agreement with the results reported in the literature. Copyright 2000 Academic Press.

Journal Article↗