PubMed Health⌕ Search

Biomedical subjects

Eric Clot

Publications and source records attributed to Eric Clot.

14 recordsLinked to original sources

AlMe3 and ZnMe2 adducts of a titanium imido methyl cation: a combined crystallographic, spectroscopic, and DFT study.

A combined experimental and DFT study of the reactions of the titanium imido methyl cation [Ti(NtBu)(Me3[9]aneN3)Me]+ (4+) with AlMe3 and ZnMe2 is described. Reaction of 4+ with AlMe3 gave [Ti(NtBu)(Me3[9]aneN3)(mu-Me)2AlMe2]+ (7+), the first structurally characterized AlMe3 adduct of a transition metal alkyl cation and a model for the presumed resting state in MAO-activated olefin polymerizations. Reaction of 4+ with ZnMe2 also gave a methyl-bridged heterobinuclear species, namely [Ti(mu-NtBu)(Me3[9]aneN3)(mu-Me)2ZnMe]+ (8+), the first directly observed ZnMe2 adduct of a transition metal alkyl cation. At room temperature, all three metal-bound methyls of 8+ underwent rapid exchange with those of free ZnMe2, whereas at 233 K only the terminal Zn-Me group exchanged significantly. Addition of AlMe3 to 8+ quantitatively formed 7+ and ZnMe2. Reaction of 4+ with Cp2ZrMe2 gave [Ti(NtBu){Me2(mu-CH2)[9]aneN3}(mu-CH2)ZrCp2]+ (10+) via a highly selective double C-H bond activation reaction in which both alkyl groups of Cp2ZrMe2 were lost. DFT calculations on models of 7+ confirmed the approximately square-based pyramidal geometries for the bridging methyl groups. Calculations on 8+ found that the formation of the Ti(mu-Me)2Zn moiety is assisted by an Nimide-->Zn dative bond. DFT calculations for the sterically less encumbered methyl cation [Ti(NMe)(H3[9]aneN3)Me]+ found strong thermodynamic preferences for adducts featuring Nimide-->M (M = Al or Zn) interactions. This offers insight into recently observed structure-productivity trends in MAO-activated imido-based polymerization catalysts. Calculations on the metallocenium adducts [Cp2Ti(mu-Me)2AlMe2]+ and [Cp2Ti(mu-Me)2ZnMe]+ are described, each showing alpha-agostic interactions for the bridging methyl groups. For these systems and the imido ones, the coordination of AlMe3 to the corresponding monomethyl cation is ca. 30 kJ mol-1 more favorable than for ZnMe2.

Journal Article↗

Validation of the M-C/H-C bond enthalpy relationship through application of density functional theory.

Density functional theory has been used to calculate H-C and M-C bond dissociation enthalpies in order to evaluate the feasibility of correlating relative M-C bond enthalpies Delta H(M-C)rel with H-C bond enthalpies Delta H(H-C) via computational methods. This approach has been tested against two experimental correlations: a study of (a) Rh(H)(R)(Tp')(CNCH2CMe3) [R = hydrocarbyl, Tp' = HB(3,5-dimethylpyrazolyl)3] (Wick, D. D.; Jones, W. D. Organometallics 1999, 18, 495) and (b) Ti(R)(silox)2(NHSit-Bu3) (silox = OSit-Bu3) (Bennett, J. L.; Wolczanski, P. T. J. Am. Chem. Soc. 1997, 119, 10696). We show that the observation that M-C bond enthalpies increase more rapidly with different substituents than H-C bond enthalpies is reproduced by theory. Quantitative slopes of the correlation lines are reproduced within 4% of the experimental values with a B3PW91 functional and with very similar correlation coefficients. Absolute bond enthalpies are reproduced within 6% for H-C bonds, and relative bond enthalpies for M-C bonds are reproduced within 30 kJ mol(-1) for Rh-C bonds and within 19 kJ mol(-1) for Ti-C bonds. Values are also calculated with the BP86 functional.

Journal Article↗

DFT calculations of d0 M(NR)(CHtBu)(X)(Y) (M = Mo, W; R = CPh3, 2,6-iPr-C6H3; X and Y = CH2tBu, OtBu, OSi(OtBu)3) olefin metathesis catalysts: structural, spectroscopic and electronic properties.

DFT(B3PW91) calculations have been carried out to rationalise the structural, electronic and spectroscopic properties of Mo and W imido M(NR1)(CHR2)(X)(Y) olefin metathesis catalysts by using either simplified or actual ligands of the experimental complexes. The calculated structures, energetics (preference for the syn isomer and alkylidene rotational barrier for the syn/anti interconversion), and spectroscopic properties (NMR J(C-H) coupling constants) are in good agreement with available experimental data. Additionally, the alkylidene nu(C-H) stretching frequencies, not available experimentally, have been calculated. These quasi-tetrahedral complexes have a linear imido group and a C-H alkylidene agostic interaction, which stabilizes the syn isomer. Whether looking at M(NR1)(CHR2)(X)(Y), M = Mo, W, or the isolobal Re complexes, Re(CR1)(CHR2)(X)(Y), a linear correlation is obtained between both the alkylidene nu(C-H) stretching frequencies and J(C-H) coupling constants with the calculated alkylidene C-H bond lengths. These correlations show that the strength of the alpha-C-H agostic interaction increases from alkylidyne Re to imido group 6 complexes and from Mo to W. The NBO and AIM Bader analyses show firstly that the imido and alkylidyne groups are both triply bonded to the metal, but that the triply bonded imido ligand is a weaker electron donor than the alkylidyne, hence the stronger alpha-C-H agostic interaction for group 6 imido complexes. Secondly, one of the pi bonds of the triply bonded ligand is weakened at the transition state of the alkylidene rotation: while no lone pair is formed, the metal-ligand triple bond is polarized. This is more favourable for an imido than for an alkylidyne ligand, hence the lower alkylidene rotational barrier for the former complexes. Conversely, the aryl imido is even less of an electron donor than the alkyl imido group, which in turn strengthens the alpha-C-H agostic interaction and lowers the alkylidene rotational barrier even more.

Journal Article↗

Structure and reactivity of trans-bis[2-(2-chloroethyl)pyridine]palladium chloride (1). A study on the elimination reaction of 1 and 2-(2-chloroethyl)pyridine induced by quinuclidine in acetonitrile.

[reaction: see text] The trans-bis[2-(2-chloroethyl)pyridine]palladium chloride (1) has been prepared and structurally characterized by X-ray spectroscopy and computational study. The X-ray structure of 1 is consistent with the trans isomer (with respect to Pd). The NMR spectrum and the computational study are in agreement with an equilibrium in CD3CN solution between two isomers of the trans structure. The reaction of the palladium complex with quinuclidine in CH3CN, at 25 degrees C, leads to competing elimination and displacement reactions with formation of vinylpyridine and chloroethylpyridine in a ratio of 1.5:1. However, the rate constant for formation of uncoordinated (vinyl)pyridine monitored by HPLC (kQ(HPLC) = 2.3 x 10(-3) M(-1) s(-1)) is nearly 3 times slower than a rate constant monitored spectrophotometrically (kQ = 6.5 x 10(-3) M(-1) s(-1)). This suggests that the initial product of elimination is a palladium complex of vinylpyridine and that displacement from this complex is partially rate determining in the formation of the uncoordinated product. A study by UV spectroscopy at lambda = 295 nm of trans-bis[2-(2-chloroethyl)pyridine-d2]palladium chloride with quinuclidine (Q) has shown the presence of a significant primary kinetic isotope effect, kQ(H)/kQ(D) = 1.8, for the elimination reaction within the Pd complex, 1. The second-order rate constant for the beta-elimination reaction from 2-(2-chloroethyl)pyridine induced by quinuclidine in CH3CN at 25 degrees C is kQ(FREE) = 6.2 x 10(-6) M(-1) s(-1). It can be observed as a significant activation (about 3 orders of magnitude) of the beta-elimination reaction within the complex 1 with respect to the free 2-(2-chloroethyl)pyridine. The possible mechanism in agreement with these results is discussed.

Journal Article↗

An anion-dependent switch in selectivity results from a change of C-H activation mechanism in the reaction of an imidazolium salt with IrH5(PPh3)2.

Changing the counteranion along the series Br, BF4, PF6, SbF6 in their ion-paired 2-pyridylmethyl imidazolium salts causes the kinetic reaction products with IrH5(PPh3)2 to switch from chelating N-heterocyclic carbenes (NHCs) having normal C2 (N path) to abnormal C5 binding (AN path). Computational work (DFT) suggests that the AN path involves C-H oxidative addition to Ir(III) to give Ir(V) with little anion dependence. The N path, in contrast, goes by heterolytic C-H activation with proton transfer to the adjacent hydride. The proton that is transferred is accompanied by the counteranion in an anion-coupled proton transfer, leading to an anion dependence of the N path, and therefore of the N/AN selectivity. The N path goes via Ir(III), not Ir(V), because the normal NHC is a much less strong donor ligand than the abnormal NHC. PGSE NMR experiments support the formation of ion-pair in both the reactants and the products. 19F,1H-HOESY NMR experiments indicate an ion-pair structure for the products that is consistent with the computational prediction (ONIOM(B3PW91/UFF)).

Journal Article↗

d0 Re-based olefin metathesis catalysts, Re([triple bond]CR)(=CHR)(X)(Y): the key role of X and Y ligands for efficient active sites.

DFT(B3PW91) calculations show that the reaction pathways for ethylene metathesis with Re([triple bond]CMe)(=CHMe)(X)(Y) (X/Y = CH2CH3/CH2CH3; CH2CH3/OSiH3; OSiH3/CH2CH3; OCH3/OCH3, CH2CH3/OCH3, and OCF3/OCF3) occur in two steps: first, the pseudo-tetrahedral d0 Re complexes distort to a trigonal pyramid to open a coordination site for ethylene, which remains far from Re (early transition state for C-C bond formation). The energy barrier, determined by the energy required to distort the catalyst, is the lowest for unsymmetrical ligands (X not equal Y) when the apical site of the TBP is occupied by a good sigma-donor ligand (X) and the basal site by a poor sigma-donor (Y). Second, the formation of metallacyclobutanes (late transition state for C-C bond formation) has a low energy barrier for any type of ligands, decreasing for poor sigma-donor X and Y ligands, because they polarize the Re-C alkylidene bond as Re(+delta)=C(-delta), which favors the reaction with ethylene, itself polarized by the metal center in the reverse way. The metallacyclobutane is also a TBP, with apical alkylidyne and Y ligands, and it is stabilized by poor sigma-donor X and Y. The best catalyst will have the more shallow potential energy surface, and will thus be obtained for the unsymmetrical set of ligands with X = a good sigma-donor (alkyl) and Y = a poor sigma-donor (O-based ligand). This rationalizes the high efficiency of well-defined Re alkylidene supported on silica, compared to its homogeneous equivalent, Re([triple bond]CMe)(=CHMe)(OR)2.

Alkenes↗

Well-defined imidotitanium alkyl cations: agostic interactions, migratory insertion vs.[2+2] cycloaddition, and the first structurally authenticated AlMe(3) adduct of any transition metal alkyl cation.

The imidotitanium alkyl cations [Ti(NtBu)(Me3[9]aneN3)R]+ (R = Me (3+) or CH2SiMe3(4+)) possess either a very weak alpha-agostic or beta-Si-C agostic interactions, respectively, according to 13C and 29Si NMR and DFT studies; reaction of (4+) with iPrNCNiPr gives totally selective insertion into the Ti-alkyl bond; reaction of 3+ with AlMe3 gives the first structurally characterised AlMe3 adduct of a transition metal alkyl cation (Me3[9]aneN3 = 1,4,7-trimethyltriazacyclononane).

Journal Article↗

Is the allylpalladium structure altered between solid and solutions?

Recent EXAFS measurements on [(Ph(2)PCH(2)CH(2)PPh(2))Pd(H(2)CCHCMe(2))]O(3)SCF(3) (Tromp et al. J. Am. Chem. Soc. 2002, 124, 14814) were interpreted as evidence that, when the complex is dissolved in THF, the allyl ligand adopts an eta(2) structure with a dangling allyl CH(2) substituent. DFT calculations of the Pd complex using H(2)P-CH(2)CH(2)-PH(2) as a model for Ph(2)P-CH(2)CH(2)-PPh(2) (dppe), in the absence or the presence of the triflate counteranion, and modeling the THF solvent by explicit Me(2)O molecules or by a continuum model give always a conventional eta(3)-H(2)CCHCMe(2) structure with equal Pd-C bonds to the terminal carbon centers of the allyl. QM/MM calculations using the dppe ligand also fail to support an eta(2)-allyl structure as a global minimum. The EXAFS parameter space is shown to have multiple minima. These have very similar overall EXAFS, but have very different structural parameters. The minimum that was the basis for the previous structural conclusion gives a slightly better fit but has unrealistic Debye-Waller factors and threshold energies.

Alkenes↗

Double geminal C-H activation and reversible alpha-elimination in 2-aminopyridine iridium(III) complexes: the role of hydrides and solvent in flattening the free energy surface.

[H2Ir(OCMe2)2L2]BF4 (1) (L = PPh3), a preferred catalyst for tritiation of pharmaceuticals, reacts with model substrate 2-(dimethylamino)pyridine (py-NMe2; py = 2-pyridyl) to give chelate carbene [H2Ir(py-N(Me)CH=)L2]BF4 (2a) via cyclometalation, H2 loss, and reversible alpha-elimination. Agostic intermediate [H2Ir(py-N(Me)CH2-H)L2]BF4) (4a), seen by NMR, is predicted (DFT(B3PW91) computations) to give C-H oxidative addition to form the alkyl intermediate [(H)(eta2-H2)Ir(py-N(Me)CH2-)L2]BF4. Loss of H2 leads to the fully characterized alkyl [HIr(OCMe2)(py-N(Me)CH2-)L2]BF4 (3a(Me2CO)), which loses acetone to give alkylidene hydride 2a by rapid reversible alpha-elimination. 2a rapidly reacts with excess H2 in d6-acetone to generate [H2Ir(OC(CD3)2)2L2]BF4 (1-d12), 3a((CD3)2CO), and py-NMe2 in a 1:1:1 ratio, showing reversibility and accounting for the selective isotope exchange catalyzed by 1. Reaction of 1 with py-N(CH2)4 gives the fully characterized carbene 2c. A cis-L(2) carbene intermediate, cis-2c, observed by NMR, reacts with CO via retro alpha-elimination to give the alkyl 3cCO, while the trans isomer, 2c, does not react; retro alpha-elimination thus requires the Ir-H bond to be orthogonal to the carbene plane. Consistent with experiment, computational studies show a particularly flat PE surface with activation of the agostic C-H bond giving a less stable H2 complex, then formation of a kinetic carbene complex with cis-L, only seen experimentally for py-N(CH2)4. Hydrides at key positions, together with gain or loss of solvent and H2, flatten the PE (DeltaG) surfaces to allow fast catalysis.

Journal Article↗

Defluorination of perfluoropropene using Cp*2ZrH2 and Cp2ZrHF: a mechanism investigation from a joint experimental-theoretical perspective.

Cp*(2)ZrH(2) (1) (Cp* = pentamethylcyclopentadienyl) reacts with perfluoropropene (2) to give Cp*(2)ZrHF (3) and hydrodefluorinated products under very mild conditions. Initial C-F bond activation occurs selectively at the vinylic terminal position of the olefin to exchange fluorine for hydrogen. Subsequent hydrodefluorination leads to the formation of the n-propylhydride complex Cp*(2)ZrH(CH(2)CH(2)CH(3)), which can be cleaved with dihydrogen to give propane and 1. A theoretical study of the reaction of Cp*(2)ZrH(2) (Cp* = cyclopentadienyl) and CF(2)[double bond]CF(CF(3)) has been undertaken. Several mechanisms have been examined in detail using DFT(B3PW91) calculations and are discussed for this H/F exchange: (a) internal olefin insertion/beta-fluoride elimination, (b) external olefin insertion/beta-fluoride elimination, and (c) F/H metathesis from either an inside or outside approach. Of these, the first case is found to be energetically preferred. Selective defluorination at the terminal carbon has been shown to be favored over defluorination at the substituted and allylic carbons.

Journal Article↗

Biscarbene-ruthenium complexes in catalysis: novel stereoselective synthesis of (1E,3E)-1,4-disubstituted-1,3-dienes via head-to-head coupling of terminal alkynes and addition of carboxylic acids.

The reaction of a variety of alkynes RCtbd1;CH with a variety of carboxylic acids R(1)CO(2)H, in the presence of 5% of RuCl(COD)C(5)Me(5), selectively leads to the dienylesters (1E,3E)-RCH(1)=CH(2)-CH(3)=C(R)(O(2)CR(1)). The reaction also applies to amino acid and dicarboxylic acid derivatives. It is shown that the first step of the reaction consists of the head-to-head alkyne coupling and of the formation of the metallacyclic biscarbene-ruthenium complex isolated for R = Ph and catalyzing the formation of dienylester. D-labeled reactions show that the alkyne protons remain at the alkyne terminal carbon atoms and carboxylic acid protonates the C(1) carbon atom. QM/MM (ONIOM) calculations, supporting a mixed Fischer-Schrock-type biscarbene complex, show that protonation occurs preferentially at the carbene carbon C(1) adjacent to Ru, in the relative cis position with respect to the Ru-Cl bond, to give a mixed C(1)alkyl-C(4)carbene complex in which the C(4) carbene is conjugated with the noncoordinated C(2)=C(3) double bond. This 16-electron intermediate has a weak stabilizing alpha agostic C-H bond. This most stable isomer appears to have a C(4) center more accessible to the nucleophilic addition which accounts for the experimentally observed product.

Journal Article↗

PGSE and NOE NMR evidence for higher order aggregation in some cationic ruthenium complexes in both protic and aprotic solvents.

PGSE and NOE NMR measurements were carried out for complexes [Ru(eta(6)-cymene)((2-R-C(6)H(4))N=C(Me)-C(Me)=N(2-R-C(6)H(4)))Cl]X (X = BF(4) or BPh(4)) in both protic and aprotic solvents with a relative permettivity (epsilon(r)) ranging from 2.27 (benzene-d(6)) to 46.45 (dimethyl sulfoxide-d(6)). PGSE and NOE results indicate that complexes have a tendency to aggregate even in medium-polarity solvents such as ethanol (epsilon(r) = 24.55) and methanol (epsilon(r) = 32.66). In addition, the aggregation process is favored by a decrease of epsilon(r) and, unexpectedly, by protic solvents. NOE measurement investigations, interpreted with the help of theoretical calculations and confirmed by X-ray single crystal studies, suggest different aggregation processes for the two counteranions: two cationic moieties approach each other when X = BF(4) while the anion bridges two cationic moieties when X = BPh(4).

Journal Article↗

Synthesis and reactivity of the imidotungsten methyl cation [W(N2Npy)(NPh)Me]+: CO2 adds to the W=NPh bond and does not insert into the W-Me bond.

The imidotungsten dimethyl compound [W(N2Npy)(NPh)Me2] 2 reacts with BArF3 to form the cationic complex [W(N2Npy)(NPh)Me]+ 3+ [anion = [MeBArF3]-; ArF = C6F5; N2Npy = MeC(2C5H4N)(CH2NSiMe3)2] which undergoes methyl group exchange with added 2, [Cp2ZrMe2] or ZnMe2; treatment of cation 3+ with CO2 or isocyanates leads to cycloaddition reactions at the W=NPh bond and not insertion into the W-Me bond, despite the latter product being the most thermodynamically favourable according to DFT calculations.

Journal Article↗