PubMed Health⌕ Search

Biomedical subjects

Gadi Rothenberg

Publications and source records attributed to Gadi Rothenberg.

18 recordsLinked to original sources
PubMed2006

A simple method for measuring the size of metal nanoclusters in solution.

The connection between quantum size effects and the surface plasmon resonance of metal nanoclusters is introduced and the pros and cons of in situ and ex situ cluster analysis methods are outlined. A new method for estimating the size of nanoclusters is presented. This method combines core/shell cluster synthesis, UV-visible spectroscopy, and Mie theory. The core/shell approach enables the estimation of metal cluster sizes directly from the UV-visible spectra, even for transition metal nanoclusters such as Pd that have no distinct surface-plasmon peak in UV-visible region. Pd/Au and Au/Pd core/shell clusters as well as Au-Pd alloy clusters are synthesized and used as test cases for simulations and spectroscopic measurements. The results of the simulations and UV-visible spectroscopy experiments are validated with transmission electron microscopy.

Journal Article↗
PubMed2006

In-situ UV-visible study of Pd nanocluster formation in solution.

The formation of Pd nanoclusters in solution is studied. This system has two types of light-absorbing species: Pd ions which absorb light via electronic transitions and Pd clusters and aggregates which absorb light via valence-conduction transitions and also scatter light due to their nanometric dimensions. Here we monitor these dynamic changes using UV-visible spectroscopy. The reduction and clustering concentration profiles are extracted from the raw data using a combination of net analyte signal (NAS) and principal component analysis (PCA) methods. PdCl2, Pd(OAc)2 and Pd(NO3)2 are used as Pd2+ precursors and various tetra-n-octylammonium carboxylates are applied as reducing and stabilising agents. This in situ approach enables the quantification of both the reduction of the Pd2+ ions and the growth of the Pd clusters. Kinetic models that account for ion reduction, cluster growth and aggregation are presented and the influence of the counteranions and the reducing agents on these processes is discussed.

Acetates↗
PubMed2006

Clean diesel power via microwave susceptible oxidation catalysts.

The problem of soot emissions from diesel engines is introduced and the possible solution of combining doped perovskites and microwave (mw) irradiation to "clean up" diesel soot filters is outlined. Eighteen doped perovskite catalysts are synthesized and tested for propane and CO oxidation, which are taken as model components for soot. The activity, selectivity, and SO2 tolerance are compared under conventional heating and mw irradiation. By combining mw irradiation and doped perovskites, one can create "hot spots" on the catalyst, resulting in efficient and selective heating of the active site, as well as less poisoning. Sr-doped and Ce-doped manganese perovskites show the highest activity. These catalysts are also the most selective, and have a high mw susceptibility. Optimal SO2 tolerance is displayed by Cr perovskites, from which the La0.8Ca0.2CrO3 combination uniquely converts propane before CO, and therefore can be used to remove >C2 hydrocarbons from a mix with CO. Possible mechanistic scenarios are presented and discussed.

Journal Article↗
PubMed2005

One-pot Pd/C catalysed 'domino' HALEX and Sonogashira reactions: a ligand- and Cu-free alternative.

The advantages of combining heterogeneous catalysis and aryl chloride substrates for cross-coupling are introduced. A heterogeneous Pd/C catalyst is used for activating aryl bromides and electron withdrawing aryl chlorides via a one-pot 'domino' HALEX-Sonogashira reaction. No ligand or co-catalyst is required, and the cross-coupling products are obtained in moderate to good yields. The influence of the solvent, base, iodide source and catalyst is evaluated. The catalyst is reusable for at least six consecutive reaction cycles. A variation on this reaction using catalytic amounts of KI is also proposed.

Journal Article↗
PubMed2005

Palladium-coated nickel nanoclusters: new Hiyama cross-coupling catalysts.

The advantages of bimetallic nanoparticles as C-C coupling catalysts are discussed, and a simple, bottom-up synthesis method of core-shell Ni-Pd clusters is presented. This method combines electrochemical and 'wet chemical' techniques, and enables the preparation of highly monodispersed structured bimetallic nanoclusters. The double-anode electrochemical cell is described in detail. The core-shell Ni-Pd clusters were then applied as catalysts in the Hiyama cross-coupling reaction between phenyltrimethoxysilane and various haloaryls. Good product yields were obtained with a variety of iodo- and bromoaryls. We found that, for a fixed amount of Pd atoms, the core-shell clusters outperform both the monometallic Pd clusters and the alloy bimetallic Ni-Pd ones. THF is an excellent solvent for this process, with less than 2% homocoupling by-product. The roles of the stabiliser and the solvent are discussed.

Catalysis↗
PubMed2005

Tackling calibration problems of spectroscopic analysis in high-throughput experimentation.

High-throughput experimentation and screening methods are changing work flows and creating new possibilities in biochemistry, organometallic chemistry, and catalysis. However, many high-throughput systems rely on off-line chromatography methods that shift the bottleneck to the analysis stage. On-line or at-line spectroscopic analysis is an attractive alternative. It is fast, noninvasive, and nondestructive and requires no sample handling. The disadvantage is that spectroscopic calibration is time-consuming and complex. Ideally, the calibration model should give reliable predictions while keeping the number of calibration samples to a minimum. In this paper, we employ the net analyte signal approach to build a calibration model for Fourier transform near-infrared measurements, using a minimum number of calibration samples based on blank samples. This approach fits very well to high-throughput setups. With this approach, we can reduce the number of calibration samples to the number of chemical components in the system. Thus, the question is no longer how many but which type of calibration samples should one include in the model to obtain reliable predictions. Various calibration models are tested using Monte Carlo simulations, and the results are compared with experimental data for palladium-catalyzed Heck cross-coupling.

Journal Article↗
PubMed2005

New device and method for flux-proportional sampling of mobile solutes in soil and groundwater.

The importance of monitoring the transport of organic contaminants in soil and groundwater, and the pros and cons of existing sampling methods, are outlined. A new, alternative sampling method is proposed, using a passive sampler that functions as a water-permeable, semi-infinite sink for passing solutes of interest. Tracers integrated in the device store information on the volume of water passing through the sampler during the installation period. The conceptual basis of the sampling method is described. This device enables flux-proportional monitoring of the concentrations of mobile contaminants in the soil and groundwater. 14C-labeled phenanthrene (PHEN) and glyphosate (GLY) are used as case study compounds in laboratory experiments. The sorption capacities and uptake kinetics of 13 adsorbents are screened and compared, as well as the dissolution kinetics of three tracer salts: calcium citrate, calcium fluoride (CaF2), and calcium hydrogen phosphate (CaHPO4). The application of the passive sampler is then demonstrated in long-term laboratory experiments, using large soil columns under steady-state hydraulic conditions. The accumulated flux of PHEN was sampled with an accuracy of 3.6%-17.8%, using graphitized carbon, hexagonal mesoporous silica, and cross-linked polymers as adsorbents. The accumulated flux of GLY was sampled with an accuracy of 12.4%, using gamma-alumina as an adsorbent. The advantages and limitations of this new environmental monitoring method are discussed.

Adsorption↗
PubMed2004

Model selection and optimal sampling in high-throughput experimentation.

The practical difficulties encountered in analyzing the kinetics of new reactions are considered from the viewpoint of the capabilities of state-of-the-art high-throughput systems. There are three problems. The first problem is that of model selection, i.e., choosing the correct reaction rate law. The second problem is how to obtain good estimates of the reaction parameters using only a small number of samples once a kinetic model is selected. The third problem is how to perform both functions using just one small set of measurements. To solve the first problem, we present an optimal sampling protocol to choose the correct kinetic model for a given reaction, based on T-optimal design. This protocol is then tested for the case of second-order and pseudo-first-order reactions using both experiments and computer simulations. To solve the second problem, we derive the information function for second-order reactions and use this function to find the optimal sampling points for estimating the kinetic constants. The third problem is further complicated by the fact that the optimal measurement times for determining the correct kinetic model differ from those needed to obtain good estimates of the kinetic constants. To solve this problem, we propose a Pareto optimal approach that can be tuned to give the set of best possible solutions for the two criteria. One important advantage of this approach is that it enables the integration of a priori knowledge into the workflow.

Journal Article↗
PubMed2004

In situ spectroscopic analysis of nanocluster formation.

The importance of small metal clusters in catalysis and the problems in understanding the clustering process in solution are outlined. A new analysis method for UV/Vis spectra is presented and applied to monitor the kinetics of ion reduction and cluster formation in situ. This method, which is based on a combination of two chemometric techniques, takes into account the entire UV/Vis spectrum and offers better interpretation possibilities than the traditional "band-assignment" approach. This is particularly true for nanoclusters because these have significant spectral contributions also outside the broad plasmon band that is usually associated with them. The reduction of palladium, gold, and silver ions and the formation of the corresponding clusters is monitored in the presence of two different reducing agents, sodium borohydride and tetraoctylammonium acetate. While Pd2+ is found to reduce and cluster directly, the spectral decomposition of the Au3+ reduction profiles shows two species corresponding to the Au+ intermediate and the Au0 clusters. The rates of reduction and clustering for Pd, Au, and Ag are compared and the possibilities of synthesising multimetallic clusters of these metals by coreduction are discussed.

Journal Article↗
PubMed2004

Self-assembly of a hexagonal phase of wormlike micelles containing metal nanoclusters.

Stable nanoclusters (approximately 2 nm in diameter) of copper, silver, gold, palladium, and ruthenium coated with hydrophobic coronas are easily trapped in self-assembled "soft crystal" hexagonal phase gels made of water and surfactants. The system's crystal structure and phase behavior are studied in detail. A partial phase diagram showing the hexagonal phase region for the water/SDS/toluene region is presented. High-energy X-ray scattering and cross-polarized optical microscopy experiments show that the clusters are tightly confined within the tubes. The thermal gel-fluid transitions of the hexagonal phase are investigated, and it is shown that the hexagonal phase can melt and recrystallize repeatedly. The melt/gel cycles enable easy trapping of various metal clusters in pre-prepared hexagonal phases. In contrast to spherical micelles, the hexagonal phase doped with metal clusters can grow without limit, basically up to the container walls (Ru-doped soft crystals grew to 0.5 mm over 2 months, forming wormlike tubes that are more than 50 microm long but only 7-10 nm in diameter).

Journal Article↗
PubMed2003

Kinetic studies of cascade reactions in high-throughput systems.

The application of robotic systems to the study of complex reaction kinetics is considered, using the cascade reaction A --> B --> C as a working example. Practical problems in calculating the rate constants k1 and k2 for the reactions A --> B and B --> C from concentration measurements of CA, CB, or CC are discussed in the light of the symmetry and invertability of the rate equations. A D-optimal analysis is used to determine the points in time and the species that will give the best (i.e., most accurate) results. When exact data are used, the most robust solution results from measuring the pair of concentrations (CA, CC). The system's information function is computed using numeric methods. This function is then used to estimate the amount of information obtainable from a given cascade reaction at any given time. The theoretical findings are compared with experimental results from a set of two-stage cascade experiments monitored using UV-visible spectroscopy. Finally, the pros and cons of using a single reaction sample to estimate both k1 and k2 are discussed.

Journal Article↗
PubMed2003

Tracking chemical kinetics in high-throughput systems.

Combinatorial chemistry and high-throughput experimentation (HTE) have revolutionized the pharmaceutical industry-but can chemists truly repeat this success in the fields of catalysis and materials science? We propose to bridge the traditional "discovery" and "optimization" stages in HTE by enabling parallel kinetic analysis of an array of chemical reactions. We present here the theoretical basis to extract concentration profiles from reaction arrays and derive the optimal criteria to follow (pseudo)first-order reactions in time in parallel systems. We use the information vector f and introduce in this context the information gain ratio, chi(r), to quantify the amount of useful information that can be obtained by measuring the extent of a specified reaction r in the array at any given time. Our method is general and independent of the analysis technique, but it is more effective if the analysis is performed on-line. The feasibility of this new approach is demonstrated in the fast kinetic analysis of the carbon-sulfur coupling between 3-chlorophenylhydrazonopropane dinitrile and beta-mercaptoethanol. The theory agrees well with the results obtained from 31 repeated C-S coupling experiments.

Journal Article↗
PubMed2002

Copper-catalyzed Suzuki cross-coupling using mixed nanocluster catalysts.

A small library of copper and noble metal nanoclusters is designed and synthesized. These clusters are tested as catalysts in the Suzuki cross-coupling of various aryl halides with phenylboronic acid. It is found that copper and copper/noble metal combination nanoclusters are active catalysts for this reaction, the most active being the combined copper/palladium clusters. Iodo-, bromo-, and chloroarenes can be used. In the case of p-nitrobromobenzene, a one-pot cross-coupling and selective hydrogenation is achieved.

Journal Article↗
PubMed2002

Assessing the removal of inorganic colloids and Cryptosporidium parvum from drinking water.

A new batch device that simulates the conditions in water and wastewater treatment plants and enables the study of low-concentration feeds is described. The application of this apparatus to the monitoring of the concentration of inorganic and/or biological contaminants is demonstrated, using kaolin particles and Cryptosporidium parvum oocysts, respectively. The rate of inorganic particle attachment to the static medium is found to be directly proportional to the initial influent concentration. On the other hand, Cryptosporidium parvum removal is found to be more effective in the presence of additional (kaolin) particles, and this is attributed to electrostatic interactions between oppositely charged layers on the absorbing medium. Accordingly, the addition of humic materials is found to inhibit the removal process, possibly by neutralizing the positive charge on the kaolin particles. The relevance of these results to existing water purification processes in general and to risk assessment of microbiological contamination in particular is discussed.

Animals↗