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Biomedical subjects

Haim Rozenberg

Publications and source records attributed to Haim Rozenberg.

14 recordsLinked to original sources
PubMed2007

Osmium-mediated C--H and C--C bond cleavage of a phenolic substrate: p-quinone methide and methylene arenium pincer complexes.

The diphosphine 2,4,6-(CH(3))(3)-3,5-(iPr(2)PCH(2))(2)C(6)OH (1) reacts with [OsCl(2)(PPh(3))(3)] in presence of an excess of triethylamine to yield the isomeric para-quinone methide derivatives [Os{4-(CH(2))-1-(O)-2,6-(CH(3))(2)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(H)(PPh(3))] (2 and 3), which differ in the positions of the mutually trans hydride and chloride ligands. Complex 2 reacts with CO to afford the dicarbonyl species [Os{1-(O)-2,4,6-(CH(3))(3)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(CO)(2)] (4), which results from hydride insertion into the quinonic double bond. Protonation of 2 and 3 leads to the formation of the methylene arenium derivative [Os{4-(CH(2))-1-(OH)-2,6-(CH(3))(2)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(H)(PPh(3))][OSO(2)CF(3)] (5 a). The diphosphine 1 reacts with [OsCl(2)(PPh(3))(3)] at 100 degrees C under H(2) to afford [Os{1-(OH)-2,6-(CH(3))(2)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(H(2))(PPh(3))] (6), a PCP pincer complex resulting formally from C(sp(2))--C(sp(3)) cleavage of the C--CH(3) group in 1. C--C hydrogenolysis resulting in the same complex is achieved by heating 2 under H(2) pressure. Reaction of the diphosphine substrate with [OsCl(2)(PPh(3))(3)] under H(2) at lower temperature allows the observation of a methylene arenium derivative resulting from C--H activation, [Os{4-(CH(2))-1-(OH)-2,6-(CH(3))(2)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(2)(H)] (7). This compound reacts with PPh(3) in toluene to afford the ionic derivative [Os{4-(CH(2))-1-(OH)-2,6-(CH(3))(2)-3,5-(iPr(2)PCH(2))(2)C(6)}(Cl)(H)(PPh(3))]Cl (5 b). X-ray diffraction studies have been carried out on compounds 2, 3, 4, 5 b, 6, and 7, which allows the study of the structural variations when going from methylene arenium to quinone methide derivatives.

Journal Article↗
PubMed2006

Structural basis of DNA recognition by p53 tetramers.

The tumor-suppressor protein p53 is among the most effective of the cell's natural defenses against cancer. In response to cellular stress, p53 binds as a tetramer to diverse DNA targets containing two decameric half-sites, thereby activating the expression of genes involved in cell-cycle arrest or apoptosis. Here we present high-resolution crystal structures of sequence-specific complexes between the core domain of human p53 and different DNA half-sites. In all structures, four p53 molecules self-assemble on two DNA half-sites to form a tetramer that is a dimer of dimers, stabilized by protein-protein and base-stacking interactions. The protein-DNA interface varies as a function of the specific base sequence in correlation with the measured binding affinities of the complexes. The new data establish a structural framework for understanding the mechanisms of specificity, affinity, and cooperativity of DNA binding by p53 and suggest a model for its regulation by regions outside the sequence-specific DNA binding domain.

Apoptosis↗
PubMed2005

Total syntheses of Yingzhaosu A and of its C(14)-epimer including the first evaluation of their antimalarial and cytotoxic activities.

[reaction: see text] The molecular structure of the naturally occurring antimalarial agent yingzhaosu A (1) is characterized by a 2,3-dioxabicyclo[3.3.1]nonane system (3a), an allylic alcohol, a homoallylic alcohol, and five stereogenic centers. Herein we report on the total synthesis of yingzhaosu A (1) in eight steps and 7.3% overall yield starting from (S)-limonene (12). To maximize efficacy, the bridged bicyclic endoperoxide molecular core was constructed by a multicomponent free-radical domino reaction in which five bonds are formed in a single operation. In addition, reaction protocols that are compatible with the sensitivity of the peroxide function to strong basic and nucleophilic reagents as well as to reducing agents were employed. An intriguing step involved the selective hydrogenation of a carbon-carbon double bond in the presence of a peroxide and an aldehyde function to give aldehyde peroxide 7. The two major synthons (aldehydoperoxide 7 and its complementary five-carbon atom unit 35) were linked through a Mukaiyama aldol reaction followed by in situ dehydration under mild buffered basic conditions. The carbonyl group in the resulting peroxidic enone 39 was stereoselectively reduced with either R-CBS catalyst (42b) to give, after in situ desilylation, yingzhaosu A (1) or with S-CBS catalyst (42a) its C(14)-epimer 40. The first quantitative in vitro and in vivo data for the antimalarial activity of yingzhaosu A (1) and its C(14)-epimer 40 are reported. The C(14)-epiyingzhaosu A (40) exhibits potent cytotoxic activity against the KB nasal-pharyngeal cancer cell line in vitro.

Antimalarials↗
PubMed2005

Structures of the DNA-binding site of Runt-domain transcription regulators.

Runt-domain (RD) proteins are transcription factors that play fundamental roles in various developmental pathways. They bind specifically to DNA sequences of the general form PyGPyGGTPy (Py = pyrimidine), through which they regulate transcription of target genes. The DNA duplex TCTGCGGTC/TGACCGCAG, incorporating the binding site for the RD transcription factors (bold), was crystallized in space group P4(3). X-ray analysis of two crystals diffracting to 1.7 and 2.0 angstroms resolution, which had slight variations in their unit-cell parameters, revealed two distinct conformations of the A-DNA helix. The two crystal structures possessed several structure and hydration features that had previously been observed in A-DNA duplexes. A comparative analysis of the present A-DNA structures and those of previously reported B-DNA crystal structures of RD-binding sites in free and protein-bound states showed the various duplexes to display several common features. Within this series, the present A-DNA duplexes adopt two conformations along the pathway from the canonical A-DNA to the B-DNA forms and the protein-bound helices display conformational features that are intermediate between those of the current A-DNA structures and that of the B-DNA-type helix of the free RD target. Based on these data and energy considerations, it is likely that the propensity of the RD-binding site to adopt the A-DNA or B-DNA conformation in solution depends on the sequence context and environmental conditions, and that the transition from either DNA form to the protein-bound conformation involves a small energy barrier.

Base Sequence↗
PubMed2004

Nucleophilic de-coordination and electrophilic regeneration of "hemilabile" pincer-type complexes: formation of anionic dialkyl, diaryl, and dihydride Pt(II) complexes bearing no stabilizing pi-acceptors.

Novel anionic dialkyl, diaryl, and dihydride platinum(II) complexes based on the new "long-arm" hemilabile PCN-type ligand C6H4[CH2P(tBu)2](CH2)2N(CH3)2 with the general formula Li+[Pt(PCN)(R)2]- (R=Me (4), Ph (6) and H (9)) were prepared by reaction of [Pt(PCN)(R)] complexes (obtained from the corresponding chlorides) with an equivalent of RLi, as a result of the opening of the chelate ring. Alkylating agents based on other metals produce less stable products. These anionic d8 complexes are thermally stable although they bear no stabilizing pi acceptors. They were characterized by 1H, 31P[1H], 13C, and 7Li NMR spectroscopy; complex 9 was also characterized by single crystal X-ray crystallography, showing that the Li+ ion is coordinated to the nitrogen atom of the open amine arm and to the hydride ligand (trans to the P atom) of a neighboring molecule (H--Li=2.15 A), resulting in a dimeric structure. Complexes 4 and 9 exhibit high nucleophilic reactivity, upon which the pincer complex is regenerated. Reaction of 4 with water, methyl iodide, and iodobenzene resulted in the neutral complex [Pt(PCN)(CH3)] (3) and methane, ethane, or toluene, respectively. Labeling studies indicate that the reaction proceeds by direct electrophilic attack on the metal center, rather than attack on the alkyl ligand. The anionic dihydride complex 9 reacted with water and methyl iodide to yield [Pt(PCN)(H)] (8) and H2 or methane, respectively.

Journal Article↗
PubMed2003

Metal-stabilized phenoxonium cation.

An unprecedented metal-stabilized phenoxonium cation was prepared by a process involving dearomatization of a phenoxy complex. The unique eta2 C=O-metal (iridium) coordination mode leaves the positive charge delocalized within the former aromatic ring. The X-ray structure and conversion into eta2 C=O-coordinated metal-quinone complex are described.

Cations↗
PubMed2003

Dimethylsulfoxide as a ligand for RhI and IrI complexes--isolation, structure, and reactivity towards X-H bonds (X=H, OH, OCH3).

Novel neutral and cationic Rh(I) and Ir(I) complexes that contain only DMSO molecules as dative ligands with S-, O-, and bridging S,O-binding modes were isolated and characterized. The neutral derivatives [RhCl(DMSO)(3)] (1) and [IrCl(DMSO)(3)] (2) were synthesized from the dimeric precursors [M(2)Cl(2)(coe)(4)] (M=Rh, Ir; COE=cyclooctene). The dimeric Ir(I) compound [Ir(2)Cl(2)(DMSO)(4)] (3) was obtained from 2. The first example of a square-planar complex with a bidentate S,O-bridging DMSO ligand, [(coe)(DMSO)Rh(micro-Cl)(micro-DMSO)RhCl(DMSO)] (4), was obtained by treating [Rh(2)Cl(2)(coe)(4)] with three equivalents of DMSO. The mixed DMSO-olefin complex [IrCl(cod)(DMSO)] (5, COD=cyclooctadiene) was generated from [Ir(2)Cl(2)(cod)(2)]. Substitution reactions of these neutral systems afforded the complexes [RhCl(py)(DMSO)(2)] (6), [IrCl(py)(DMSO)(2)] (7), [IrCl(iPr(3)P)(DMSO)(2)] (8), [RhCl(dmbpy)(DMSO)] (9, dmbpy=4,4'-dimethyl-2,2'-bipyridine), and [IrCl(dmbpy)(DMSO)] (10). The cationic O-bound complex [Rh(cod)(DMSO)(2)]BF(4) (11) was synthesized from [Rh(cod)(2)]BF(4). Treatment of the cationic complexes [M(coe)(2)(O=CMe(2))(2)]PF(6) (M=Rh, Ir) with DMSO gave the mixed S- and O-bound DMSO complexes [M(DMSO)(2)(DMSO)(2)]PF(6) (Rh=12; Ir=in situ characterization). Substitution of the O-bound DMSO ligands with dmbpy or pyridine resulted in the isolation of [Rh(dmbpy)(DMSO)(2)]PF(6) (13) and [Ir(py)(2)(DMSO)(2)]PF(6) (14). Oxidative addition of hydrogen to [IrCl(DMSO)(3)] (2) gave the kinetic product fac-[Ir(H)(2)Cl(DMSO)(3)] (15) which was then easily converted to the more thermodynamically stable product mer-[Ir(H)(2)Cl(DMSO)(3)] (16). Oxidative addition of water to both neutral and cationic Ir(I) DMSO complexes gave the corresponding hydrido-hydroxo addition products syn-[(DMSO)(2)HIr(micro-OH)(2)(micro-Cl)IrH(DMSO)(2)][IrCl(2)(DMSO)(2)] (17) and anti-[(DMSO)(2)(DMSO)HIr(micro-OH)(2)IrH(DMSO)(2)(DMSO)][PF(6)](2) (18). The cationic [Ir(DMSO)(2)(DMSO)(2)]PF(6) complex (formed in situ from [Ir(coe)(2)(O=CMe(2))(2)]PF(6)) also reacts with methanol to give the hydrido-alkoxo complex syn-[(DMSO)(2)HIr(micro-OCH(3))(3)IrH(DMSO)(2)]PF(6) (19). Complexes 1, 2, 4, 5, 11, 12, 14, 17, 18, and 19 were characterized by crystallography.

Journal Article↗
PubMed2003

Interplay between solvent and counteranion stabilization of highly unsaturated rhodium(III) complexes: facile unsaturation-induced dearomatization.

Abstraction of the chloride ligand from the PCN-based chloromethylrhodium complex 2 by AgX (X=BF(4)(-), CF(3)SO(3)(-)) or a direct C-C cleavage reaction of the PCN ligand 1 with [(coe)(2)Rh(solv)(n)](+)X(-) (coe=cyclooctene) lead to the formation of the coordinatively unsaturated rhodium(III) complexes 3. Compound 3 a (X=BF(4)(-)) exhibits a unique medium effect; the metal center is stabilized by reversible coordination of the bulky counteranion or solvent as a function of temperature. Reaction of [(PCN)Rh(CH(3))(Cl)] with AgBAr(f) in diethyl ether leads to an apparent rhodium(III) 14-electron complex 4, which is stabilized by reversible, weak coordination of a solvent molecule. This complex coordinates donors as weak as diethyl ether and dichloromethane. Upon substitution of the BF(4)(-) ion in [(PCN)Rh(CH(3))]BF(4) by the noncoordinating BAr(f)(-) ion in a noncoordinating medium, the resulting highly unsaturated intermediate undergoes a 1,2-metal-to-carbon methyl shift, followed by beta-hydrogen elimination, leading to the Rh-stabilized methylene arenium complex 5. This process represents a unique mild, dearomatization of the aromatic system induced by unsaturation.

Journal Article↗
PubMed2003

Metallacarbenes from diazoalkanes: an experimental and computational study of the reaction mechanism.

PCP ligand (1,3-bis-[(diisopropyl-phosphanyl)-methyl]-benzene), and PCN ligand ([3-[(di-tert-butyl-phosphanyl)-methyl]-benzyl]-diethyl-amine) based rhodium dinitrogen complexes (1 and 2, respectively) react with phenyl diazomethane at room temperature to give PCP and PCN-Rh carbene complexes (3 and 5, respectively). At low temperature (-70 degrees C), PCP and PCN phenyl diazomethane complexes (4 and 6, respectively) are formed upon addition of phenyl diazomethane to 1 and 2. In these complexes, the diazo moiety is eta(1) coordinated through the terminal nitrogen atom. Decomposition of complexes 4 and 6 at low temperatures leads only to a relatively small amount of the corresponding carbene complexes, the major products of decomposition being the dinitrogen complexes 1 and 2 and stilbene. This and competition experiments (decomposition of 6 in the presence of 1) suggests that phenyl diazomethane can dissociate under the reaction conditions and attack the metal center through the diazo carbon producing a eta(1)-C bound diazo complex. Computational studies based on a two-layer ONIOM model, using the mPW1K exchange-correlation functional and a variety of basis sets for PCP based systems, provide mechanistic insight. In the case of less bulky PCP ligand bearing H-substituents on the phosphines, a variety of mechanisms are possible, including both dissociative and nondissociative pathways. On the other hand, in the case of i-Pr substituents, the eta(1)-C bound diazo complex appears to be a critical intermediate for carbene complex formation, in good agreement with the experimental results. Our results and the analysis of reported data suggest that the outcome of the reaction between a diazoalkane and a late transition metal complex can be anticipated considering steric requirements relevant to eta(1)-C diazo complex formation.

Journal Article↗
PubMed2003

A new ligand system based on a bipyridine-functionalized calix[4]arene backbone leading to mono- and bimetallic complexes.

The synthesis of a new ligand system for mono- and bimetallic complexes based on a calixarene is described. Ligand BBPC (3, bis(bipyridine)-calix[4]arene) is obtained in three steps in 40% overall yield by first brominating one of the methyl groups of the 4,4'-dimethyl-2,2'-bipyridine in two steps and subsequently reacting it with p-tert-butylcalix[4]arene under basic conditions. Reaction of BBPC (3) with 2 equiv of [Rh(NBD)(2)]BF(4) or [Rh(NBD)(CH(3)CN)(2)]BF(4) (NBD = norbornadiene) produces the bimetallic compound BBPC[Rh(NBD)BF(4)](2) (4). Treatment of the ligand with PdCl(2)(CH(3)CN)(2) leads to the isolation of the bimetallic complex BBPC[PdCl(2)](2) (5). When the nickel precursor NiBr(2)(DME) (DME = dimethoxyethane) is reacted with BBPC, the bimetallic complex BBPC[NiBr(2)](2) (6) is isolated which, upon crystallization from methanol, gives the mononuclear bis(bipyridine) complex BBPC[NiBr(OMe)] (7). Full characterization includes X-ray structural studies of complexes 4, 5, and 7. The bimetallic compounds 4 and 5 show metal to metal distances of 4.334 A (for 4) and 3.224 A (for 5). For all three complexes, unique molecular packing arrangements were found, based on hydrophobic/hydrophilic interactions.

Journal Article↗
PubMed2003

Selective ortho C-h activation of haloarenes by an Ir(I) system.

The cationic PNP-Ir(I)(cyclooctene) complex 1 (PNP = 2,6-bis-(di-tert-butyl phosphino methyl)pyridine) reacts with benzene at 25 degrees C to quantitatively yield the crystallographically characterized, square pyramidal, iridium phenyl hydride complex cis-(PNP)Ir(Ph)(H), 2, in which the hydride is trans to the vacant coordination site. The cationic complex 2 is stable to heating at 100 degrees C, in sharp contrast to the previously reported unstable neutral, isoelectronic (PCP)Ir(H)(Ph) (PCP = eta(3)-2,6-((t)()Bu(2)PCH(2))(2)C(6)H(3)). Heating of 2 at 50 degrees C with other arenes results in arene exchange. Complex 1 activates C-H bonds of chloro- and bromobenzene with no C-halide oxidative addition being observed. Selective ortho C-H activation takes place, the process being directed by halogen coordination and being thermodynamically and kinetically favorable. The meta- and para-C-H activation products are formed at a slower rate than the ortho isomer and are converted to it. NMR data and an X-ray crystallographic study of the ortho-activated chlorobenzene complex, which was obtained as the only product upon heating of 1 with chlorobenzene at 60 degrees C, show that the chloro substituent is coordinated to the metal center.

Journal Article↗
PubMed2002

Oxidative addition of water to novel Ir(I) complexes stabilized by dimethyl sulfoxide ligands.

The oxidative addition of water to novel Ir(I) DMSO complexes is described. IrCl(DMSO)3 (1) is synthesized in 90% yield when treating a toluene slurry of [Ir2Cl2(COE)4] (COE = cyclooctene) with excess DMSO. Its dimer, [Ir2Cl2(DMSO)4] (2) is obtained in 95% yield starting from 1. The cationic complex [Ir(DMSO)4]PF6 (6) is prepared in situ from [Ir(COE)2(O=CMe2)2]PF6 (5). These complexes add water at room temperature, giving rise to the oxidative addition products syn-[(DMSO)2HIr(mu-OH)2(mu-Cl)IrH(DMSO)2] [IrCl2(DMSO)2] (3) and anti-[(DMSO)2(DMSO)HIr(mu-OH)2IrH(DMSO)2(DMSO)](PF6)2 (7), respectively. Reductive elimination in pyridine leads to quantitative isolation of mixed Ir(I) DMSO-pyridine complexes IrCl(py)(DMSO)2 (4) and [Ir(py)2(DMSO)2]PF6 (8), respectively. Compounds 1, 3, and 7 have been characterized by X-ray crystallography. 3 and 7 show dimeric structures with the hydroxo ligands bridging the iridium atoms and in 7 both O- and S-bonded DMSO ligands are present.

Journal Article↗