Biomedical subjects

R Graham Cooks

Publications and source records attributed to R Graham Cooks.

96 records · Page 6Linked to original sources

PubMed2002

Clustering of nucleobases with alkali metals studied by electrospray ionization tandem mass spectrometry: implications for mechanisms of multistrand DNA stabilization.

Self-clustering of the five common nucleobases was investigated by electrospray ionization tandem mass spectrometry and shown to provide insight into the non-covalent interactions between identical bases. Alkali and ammonium cations significantly increase self-aggregation of the nucleobases and lead to the formation of uniquely stable magic number clusters. Sodium adducts of guanine, thymine and uracil preferentially take the form of tetrameric (quartet) clusters. This gas-phase result correlates with previously reported solution-phase data on sodium cation stabilized guanosine, thymine and uracil quartet structures believed to be responsible for telomere stabilization. In the presence of potassium, cesium or ammonium cations, pentameric magic number clusters are formed from thymine and uracil, while in solution the nucleoside isoguanosine yields clusters of this favored size. The formation of magic number metaclusters occurs for thymine and uracil in the presence of ammonium cations. These doubly charged 10- and 15-mers are tentatively attributed to the formation of pentamer/ammonium cation/ pentamer sandwich structures.

Chromatography, High Pressure Liquid↗

PubMed2002

Chemical mass shifts in resonance ejection experiments in the quadrupole ion trap.

Chemical mass shifts were measured in a Paul ion trap operated in the mass-selective instability scan with resonance ejection using a custom-built instrument. These shifts, which can be as much as 2%, decrease with increasing endcap electrode separation owing to changes in the higher order contributions to the electric field. They also decrease with decreasing helium buffer gas pressure. Both of these effects are analogous to those found with boundary ejection. This suggests that the previously proposed chemical mass shift mechanism based on compound-dependent collisional modification of the ejection delay produced by field faults near the endcap electrode apertures holds true also for resonance ejection. The influence of the resonance frequency on chemical mass shifts was also investigated and it is shown that at certain working points (values of the Mathieu parameter q(z) and a(z)) non-linear resonances greatly reduce the ejection delay for all ions, regardless of their chemical structures, and thus reduce the magnitude of the chemical mass shift. Energetic collisions leading to dissociation can take place at an earlier stage during the ejection process in the mass analysis scan when using resonance ejection compared with boundary ejection. This leads to even larger chemical mass shifts of fragile ions in resonance ejection. Increasing the resonance voltage amplitude can enhance this effect. The chemical mass shifts of fragile ions increase with increase in the resonance voltage amplitude, whereas negligible changes occur for structurally stable ions.

Journal Article↗

PubMed2002

Direct analysis of volatile organic compounds in human breath using a miniaturized cylindrical ion trap mass spectrometer with a membrane inlet.

Membrane introduction mass spectrometry (MIMS) coupled to a miniature mass spectrometer equipped with a cylindrical ion trap (CIT) analyzer was used to monitor the flavor components, 3-phenyl-2-propenal and methyl salicylate, found in cinnamon and wintergreen candies, respectively, directly from human breath. The poly(dimethylsiloxane) (PDMS) membrane was operated in a trap-and-release mode, where the temperature of the membrane was cycled during the experiments, which permitted temporal resolution of the two compounds of interest, facilitating their observation in the complex sample. Under these thermally driven conditions, the 10-90% rise times for both compounds are similar (15 s for methyl salicylate, 17 s for 3-phenyl-2-propenal), but the difference in diffusivity means that the signal for 3-phenyl-2-propenal is delayed and the 10% point occurs 6 s later than that for wintergreen. Additional specificity needed for complex samples was gained by using tandem mass spectrometry.

Acrolein↗

PubMed2002

Correlations of chemical mass shifts of para-substituted acetophenones and benzophenones with Brown's sigma constants.

Relationships between chemical mass shifts and physiochemical properties of ions are sought by examining substituted acetophenones, benzophenones, and pyridines in a modified ion trap mass spectrometer. Systematic changes in chemical mass shift occur with changes in substituent in the acetophenones and the benzophenones. Brown's sigma+ constant, which is a measure of electronic effects of substituents in reactions that involve positive charge development, is shown to correlate linearly with chemical mass shifts in para-substituted acetophenones and benzophenones. Brown's sigma+ constant also correlates with the ease of dissociation of the ions via a correlation with ionization energy. It is suggested that ease of dissociation is the underlying factor in determining chemical mass shifts. The experimental results also suggest that dissociative collisions between ions and buffer gas make a much greater contribution to chemical mass shifts than do elastic collisions.

Journal Article↗

PubMed2002

Alkali chloride cluster ion dissociation examined by the kinetic method: heterolytic bond dissociation energies, effective temperatures, and entropic effects.

Branching ratios have been measured as a function of collision energy for the dissociation of mass-selected chloride-bound salt cluster ions, [Rb-35Cl-Mi]+, where Mi = Na, K, Cs. The extended version of the kinetic method was used to determine the heterolytic bond dissociation energy (HBDE) of Rb-Cl. The measured value of 480.8 +/- 8.5 kJ/mol, obtained under single collision conditions, agrees with the HBDE value (482.0 +/- 8.0 kJ/mol), calculated from a thermochemical cycle. The observed effective temperature of the collisionally activated salt clusters increases with laboratory-frame collision energy under both single- and multiple-collision conditions. Remarkably, the effective temperatures under multiple collision conditions are lower than those recorded under single-collision conditions at the same collision energy, a consequence of the inability of the triatomic ions to store significant amounts of internal energy. Laboratory-frame kinetic energy to internal energy transfer (T-->V) efficiencies range from 3.8 to 13.5%. For a given cluster ion, the T-->V efficiency decreases with increasing collision energy. Many features of the experimental results are accounted for using MassKinetics modeling (Drahos and Vékey, J. Mass Spectrom. 2001, 36, 237).

Journal Article↗

PubMed2002

Determination of pentachlorophenol by negative ion chemical ionization with membrane introduction mass spectrometry.

Pentachlorophenol (PCP) was used as a model compound to explore the potential of desorption chemical ionization (DCI) in the determination of polychlorinated pesticides using membrane introduction mass spectrometry (MIMS). A direct insertion membrane probe was modified so that a chemical ionization plasma could be established at the membrane surface. Using selected ion monitoring (SIM) in a tandem triple quadrupole mass spectrometer with isobutane chemical ionization (CI), the PCP detection limit under positive chemical ionization is 20 ppb whereas negative CI gives detection limits in the low ppb range. This performance is achieved without any pre-treatment or derivatization of the sample. Negative ion CI gives a signal that is linear over a concentration range of 2-1000 ppb. Comparison of data obtained with low ppb samples of 2,4,6-trichlorophenol, 2,3,4,6-tetrachlorophenol and pentachlorophenol suggests that the sensitivity of this analytical procedure increases with increase in the number of electronegative substituents in the molecule.

Food Contamination↗