Biomedical subjects

Samuel G Armato

Publications and source records attributed to Samuel G Armato.

At least 19 recordsLinked to original sources

PubMed2006

Modeling of mesothelioma growth demonstrates weaknesses of current response criteria.

Applicability of the Response Evaluation Criteria in Solid Tumors (RECIST) to the geometry of mesothelioma has been recently investigated. A "modified RECIST" measurement technique developed for mesothelioma proposes measurement of tumor thickness rather than maximum diameter. This study evaluated the volumetric consistency of the RECIST response criteria as applied to the modified RECIST measurement technique. Geometric models were developed to simulate mesothelioma growth, and measurements of these models were calculated. Relationships between change in model measurements and corresponding change in model volume were derived and evaluated. Application of the RECIST response criteria to the typical spherical tumor model results in partial response (PR) classification based on a 66% volume decrease and progressive disease (PD) based on a 73% volume increase; for mesothelioma model thickness measurements, the RECIST criteria result in PR classification based on a 30% volume decrease and PD based on a 20% volume increase. Alternative response criteria for mesothelioma thickness measurement (-66% for PR, +74% for PD) achieve volumetric equivalence with the RECIST criteria for spherical tumor measurement. Application of the RECIST response criteria to mesothelioma thickness measurements yields PR and PD classifications based on smaller volume changes than for spherical tumors.

Adult↗

PubMed2006

Evaluation of lung MDCT nodule annotation across radiologists and methods.

RATIONALE AND OBJECTIVES: Integral to the mission of the National Institutes of Health-sponsored Lung Imaging Database Consortium is the accurate definition of the spatial location of pulmonary nodules. Because the majority of small lung nodules are not resected, a reference standard from histopathology is generally unavailable. Thus assessing the source of variability in defining the spatial location of lung nodules by expert radiologists using different software tools as an alternative form of truth is necessary. MATERIALS AND METHODS: The relative differences in performance of six radiologists each applying three annotation methods to the task of defining the spatial extent of 23 different lung nodules were evaluated. The variability of radiologists' spatial definitions for a nodule was measured using both volumes and probability maps (p-map). Results were analyzed using a linear mixed-effects model that included nested random effects. RESULTS: Across the combination of all nodules, volume and p-map model parameters were found to be significant at P < .05 for all methods, all radiologists, and all second-order interactions except one. The radiologist and methods variables accounted for 15% and 3.5% of the total p-map variance, respectively, and 40.4% and 31.1% of the total volume variance, respectively. CONCLUSION: Radiologists represent the major source of variance as compared with drawing tools independent of drawing metric used. Although the random noise component is larger for the p-map analysis than for volume estimation, the p-map analysis appears to have more power to detect differences in radiologist-method combinations. The standard deviation of the volume measurement task appears to be proportional to nodule volume.

Artificial Intelligence↗

PubMed2006

Temporal subtraction of dual-energy chest radiographs.

Temporal subtraction and dual-energy imaging are two enhanced radiography techniques that are receiving increased attention in chest radiography. Temporal subtraction is an image processing technique that facilitates the visualization of pathologic change across serial chest radiographic images acquired from the same patient; dual-energy imaging exploits the differential relative attenuation of x-ray photons exhibited by soft-tissue and bony structures at different x-ray energies to generate a pair of images that accentuate those structures. Although temporal subtraction images provide a powerful mechanism for enhancing visualization of subtle change, misregistration artifacts in these images can mimic or obscure abnormalities. The purpose of this study was to evaluate whether dual-energy imaging could improve the quality of temporal subtraction images. Temporal subtraction images were generated from 100 pairs of temporally sequential standard radiographic chest images and from the corresponding 100 pairs of dual-energy, soft-tissue radiographic images. The registration accuracy demonstrated in the resulting temporal subtraction images was evaluated subjectively by two radiologists. The registration accuracy of the soft-tissue-based temporal subtraction images was rated superior to that of the conventional temporal subtraction images. Registration accuracy also was evaluated objectively through an automated method, which achieved an area-under-the-ROC-curve value of 0.92 in the distinction between temporal subtraction images that demonstrated clinically acceptable and clinically unacceptable registration accuracy. By combining dual-energy soft-tissue images with temporal subtraction, misregistration artifacts can be reduced and superior image quality can be obtained.

Automation↗

PubMed2006

Automated detection of lung nodules in CT scans: false-positive reduction with the radial-gradient index.

We present a number of approaches based on the radial gradient index (RGI) to achieve false-positive reduction in automated CT lung nodule detection. A database of 38 cases was used that contained a total of 82 lung nodules. For each CT section, a complementary image known as an "RGI map" was constructed to enhance regions of high circularity and thus improve the contrast between nodules and normal anatomy. Thresholds on three RGI parameters were varied to construct RGI filters that sensitively eliminated false-positive structures. In a consistency approach, RGI filtering eliminated 36% of the false-positive structures detected by the automated method without the loss of any true positives. Use of an RGI filter prior to a linear discriminant classifier yielded notable improvements in performance, with the false-positive rate at a sensitivity of 70% being reduced from 0.5 to 0.28 per section. Finally, the performance of the linear discriminant classifier was evaluated with RGI-based features. RGI-based features achieved a substantial improvement in overall performance, with a 94.8% reduction in the false-positive rate at a fixed sensitivity of 70%. These results demonstrate the potential role of RGI analysis in an automated lung nodule detection method.

Algorithms↗

PubMed2006

Temporal subtraction in chest radiography: automated assessment of registration accuracy.

Radiologists routinely compare multiple chest radiographs acquired from the same patient over time to more completely understand changes in anatomy and pathology. While such comparisons are achieved conventionally through a side-by-side display of images, image registration techniques have been developed to combine information from two separate radiographic images through construction of a "temporal subtraction image." Although temporal subtraction images provide a powerful mechanism for the enhanced visualization of subtle change, errors in the clinical evaluation of these images may arise from misregistration artifacts that can mimic or obscure pathologic change. We have developed a computerized method for the automated assessment of registration accuracy as demonstrated in temporal subtraction images created from radiographic chest image pairs. The registration accuracy of 150 temporal subtraction images constructed from the computed radiography images of 72 patients was rated manually using a five-point scale ranging from "5-excellent" to "1-poor;" ratings of 3, 4, or 5 reflected clinically acceptable subtraction images, and ratings of 1 or 2 reflected clinically unacceptable images. Gray-level histogram-based features and texture measures are computed at multiple spatial scales within a "lung mask" region that encompasses both lungs in the temporal subtraction images. A subset of these features is merged through a linear discriminant classifier. With a leave-one-out-by-patient training/testing paradigm, the automated method attained an A(z) value of 0.92 in distinguishing between temporal subtraction images that demonstrated clinically acceptable and clinically unacceptable registration accuracy. A second linear discriminant classifier yielded an A(z) value of 0.82 based on a feature subset selected from an independent database of digitized film images. These methods are expected to advance the clinical utility of temporal subtraction images for chest radiography.

Algorithms↗

PubMed2006

Automated lung segmentation of diseased and artifact-corrupted magnetic resonance sections.

Segmentation of the lungs within magnetic resonance (MR) scans is a necessary step in the computer-based analysis of thoracic MR images. This process is often confounded by image acquisition artifacts and disease-induced morphological deformation. We have developed an automated method for lung segmentation that is insensitive to these complications. The automated method was applied to 23 thoracic MR scans (413 sections) obtained from 10 patients. Two radiologists manually outlined the lung regions in a random sample of 101 sections (n=202 lungs), and the extent to which disease or artifact confounded lung border visualization was evaluated. Accuracy of lung regions extracted by the automated segmentation method was quantified by comparison with the radiologist-defined lung regions using an area overlap measure (AOM) that ranged from 0 (disjoint lung regions) to 1 (complete overlap). The AOM between each observer and the automated method was 0.82 when averaged over all lungs. The average AOM in the lung bases, where lung segmentation is most difficult, was 0.73.

Aged↗

PubMed2006

Variability in mesothelioma tumor response classification.

OBJECTIVE: The objective of our study was to evaluate observer variability in the measurement of temporal change in mesothelioma tumor thickness and in the resulting tumor response classification from CT scans. In addition, the performance of a semiautomated measurement method was evaluated. MATERIALS AND METHODS: Four observers individually used an interface that displayed two serial CT scans from the same patient to measure mesothelioma tumor thickness on the follow-up CT scans of 22 patients based on baseline scan measurements. During one session, observers acquired measurements on the follow-up scans based on written reports of baseline scan measurements; in another session, baseline scan measurements were superimposed on the baseline scan for direct visual comparison. Follow-up scan measurements also were obtained from a semiautomated method. Measurement variability and tumor response classification concordance were evaluated for manual measurements acquired in both modes and for semiautomated measurements. RESULTS: Although only a small increase in tumor response classification concordance rate was obtained with the visual approach (84.8%) relative to the more standard written-report approach (82.6%), the actual measurements acquired by observers were statistically significantly different between the two approaches (p = 0.03). Both the semiautomated measurements and the resulting tumor response classifications were consistent with manual measurements. CONCLUSION: The presentation of baseline scan tumor measurements affects measurements acquired on follow-up scans and could influence tumor response classification. The potential utility of semiautomated tumor thickness measurements was shown in the context of measuring tumor response.

Adult↗

PubMed2005

Computerized analysis of mesothelioma on CT scans.

Computed tomography (CT) has become an essential tool for monitoring the progression of mesothelioma tumor or a patient's response to treatment. Despite the accepted role of CT for the evaluation of mesothelioma, however, the current standard practice remains the manual measurement of tumor extent on CT scans. The process of manual measurement acquisition is tedious and subject to inconsistency. We have quantitatively assessed the variability of manual mesothelioma measurements both in baseline CT scans and in the context of tumor response classification across temporally sequential scans. To facilitate the acquisition of mesothelioma measurements, we have developed and evaluated computerized methods for the assessment of mesothelioma tumor thickness on CT scans; we anticipate that such computer-assisted approaches will make the radiologic assessment of mesothelioma more efficient, thus facilitating the establishment of improved clinical protocols.

Body Weights and Measures↗

PubMed2005

Evaluation of automated lung nodule detection on low-dose computed tomography scans from a lung cancer screening program(1).

RATIONALE AND OBJECTIVES: The purpose of this study was to evaluate the performance of a fully automated lung nodule detection method in a large database of low-dose computed tomography (CT) scans from a lung cancer screening program. Because nodules demonstrate a spectrum of radiologic appearances, the performance of the automated method was evaluated on the basis of nodule malignancy status, size, subtlety, and radiographic opacity. MATERIALS AND METHODS: A database of 393 thick-section (10 mm) low-dose CT scans was collected. Automated lung nodule detection proceeds in two phases: gray-level thresholding for the initial identification of nodule candidates, followed by the application of a rule-based classifier and linear discriminant analysis to distinguish between candidates that correspond to actual lung nodules and candidates that correspond to non-nodules. Free-response receiver operating characteristic analysis was used to evaluate the performance of the method based on a jackknife training/testing approach. RESULTS: An overall nodule detection sensitivity of 70% (330 of 470) was attained with an average of 1.6 false-positive detections per section. At the same false-positive rate, 83% (57 of 69) of the malignant lung nodules in the database were detected. When the method was trained specifically for malignant nodules, a sensitivity of 80% (55 of 69) was attained with 0.85 false-positives per section. CONCLUSION: We have evaluated an automated lung nodule detection method with a large number of low-dose CT scans from a lung cancer screening program. An overall sensitivity of 80% for malignant nodules was achieved with 0.85 false-positive detections per section. Such a computerized lung nodule detection method is expected to become an important part of CT-based lung cancer screening programs.

Adult↗

PubMed2005

Evaluation of semiautomated measurements of mesothelioma tumor thickness on CT scans.

RATIONALE AND OBJECTIVES: To evaluate the clinical acceptability of semiautomated methods for the measurement of mesothelioma tumor thickness in computed tomography (CT) scans. MATERIALS AND METHODS: A computer interface was developed to allow the acquisition of semiautomated mesothelioma tumor thickness measurements, which require the manual selection of a point along the outer margin of the tumor in a CT section. After application of an automated lung segmentation method, the computer automatically identifies a corresponding point along the inner margin of the tumor (as represented by the lung boundary), constructs a line segment between the manually selected outer tumor margin point and the computer-determined inner tumor margin point, and computes tumor thickness as the length of this line segment. Three radiologists and oncologists independently reviewed line segments representing the semiautomated measurements generated by three different algorithms at 134 measurement sites in the CT scans of 22 mesothelioma patients. The observers either accepted a measurement line segment or modified it through the interface. Differences between the initial semiautomated measurements and the measurements as modified by the observers were analyzed. RESULTS: The frequency with which observers accepted the semiautomated measurements without modification was as high as 86%. Of all measurements across all observers and methods (1,206 measurements), 89% were changed by 2 mm or less. CONCLUSION: We have developed semiautomated methods to measure mesothelioma tumor thickness. The potential of these methods has been demonstrated through an observer study. We expect these methods to become important tools for the efficient quantification of tumor extent.

Adult↗

PubMed2005

The radiologic measurement of mesothelioma.

The radiologic evaluation of disease, which now includes the quantification of disease, has become an essential part of clinical medicine. The unique circumferential and often scalloped morphology of mesothelioma, however, distinguishes it from other thoracic neoplasms. The challenges of measuring mesothelioma are many. In this article, the authors explore the demands, the current standard of clinical practice, and the opportunities associated with the radiologic measurement of mesothelioma.

Humans↗

PubMed2005

Vessel tree reconstruction in thoracic CT scans with application to nodule detection.

Vessel tree reconstruction in volumetric data is a necessary prerequisite in various medical imaging applications. Specifically, when considering the application of automated lung nodule detection in thoracic computed tomography (CT) scans, vessel trees can be used to resolve local ambiguities based on global considerations and so improve the performance of nodule detection algorithms. In this study, a novel approach to vessel tree reconstruction and its application to nodule detection in thoracic CT scans was developed by using correlation-based enhancement filters and a fuzzy shape representation of the data. The proposed correlation-based enhancement filters depend on first-order partial derivatives and so are less sensitive to noise compared with Hessian-based filters. Additionally, multiple sets of eigenvalues are used so that a distinction between nodules and vessel junctions becomes possible. The proposed fuzzy shape representation is based on regulated morphological operations that are less sensitive to noise. Consequently, the vessel tree reconstruction algorithm can accommodate vessel bifurcation and discontinuities. A quantitative performance evaluation of the enhancement filters and of the vessel tree reconstruction algorithm was performed. Moreover, the proposed vessel tree reconstruction algorithm reduced the number of false positives generated by an existing nodule detection algorithm by 38%.

Adult↗

PubMed2004

Automated lung segmentation for thoracic CT impact on computer-aided diagnosis.

RATIONALE AND OBJECTIVES: Automated lung segmentation in thoracic computed tomography scans is essential for the development of computer-aided diagnostic (CAD) methods. A core segmentation method may be developed for general application; however, modifications may be required for specific clinical tasks. MATERIALS AND METHODS: An automated lung segmentation method has been applied (1) as preprocessing for automated lung nodule detection and (2) as the foundation for computer-assisted measurements of pleural mesothelioma tumor thickness. The core method uses gray-level thresholding to segment the lungs within each computed tomography section. The segmentation is revised through separation of right and left lungs along the anterior junction line, elimination of the trachea and main bronchi from the lung segmentation regions, and suppression of the diaphragm. Segmentation modifications required for nodule detection include a rolling ball algorithm to include juxtapleural nodules and morphologic erosion to eliminate partial volume pixels at the boundary of the segmentation regions. RESULTS: For automated lung nodule detection, 4 of 82 actual nodules (4.9%) were excluded from the lung segmentation regions when the core segmentation method was modified compared with 14 nodules (17.1%) excluded without modifications. The computer-assisted quantification of mesothelioma method achieved a correlation coefficient of 0.990 with 134 manual measurements when the core segmentation method was used alone; correlation was reduced to 0.977 when the segmentation modifications, as adapted for the lung nodule detection task, were applied to the mesothelioma measurement task. CONCLUSION: Different CAD applications impose different requirements on the automated lung segmentation process. The specific approach to lung segmentation must be adapted to the particular CAD task.

Algorithms↗

PubMed2004

Assessment methodologies and statistical issues for computer-aided diagnosis of lung nodules in computed tomography: contemporary research topics relevant to the lung image database consortium.

Cancer of the lung and bronchus is the leading fatal malignancy in the United States. Five-year survival is low, but treatment of early stage disease considerably improves chances of survival. Advances in multidetector-row computed tomography technology provide detection of smaller lung nodules and offer a potentially effective screening tool. The large number of images per exam, however, requires considerable radiologist time for interpretation and is an impediment to clinical throughput. Thus, computer-aided diagnosis (CAD) methods are needed to assist radiologists with their decision making. To promote the development of CAD methods, the National Cancer Institute formed the Lung Image Database Consortium (LIDC). The LIDC is charged with developing the consensus and standards necessary to create an image database of multidetector-row computed tomography lung images as a resource for CAD researchers. To develop such a prospective database, its potential uses must be anticipated. The ultimate applications will influence the information that must be included along with the images, the relevant measures of algorithm performance, and the number of required images. In this article we outline assessment methodologies and statistical issues as they relate to several potential uses of the LIDC database. We review methods for performance assessment and discuss issues of defining "truth" as well as the complications that arise when truth information is not available. We also discuss issues about sizing and populating a database.

Algorithms↗

PubMed2004

Measurement of mesothelioma on thoracic CT scans: a comparison of manual and computer-assisted techniques.

Our purpose in this study was to evaluate the variability of manual mesothelioma tumor thickness measurements in computed tomography (CT) scans and to assess the relative performance of six computerized measurement algorithms. The CT scans of 22 patients with malignant pleural mesothelioma were collected. In each scan, an initial observer identified up to three sites in each of three CT sections at which tumor thickness measurements were to be made. At each site, five observers manually measured tumor thickness through a computer interface. Three observers repeated these measurements during three separate sessions. Inter- and intra-observer variability in the manual measurement of tumor thickness was assessed. Six automated measurement algorithms were developed based on the geometric relationship between a specified measurement site and the automatically extracted lung regions. Computer-generated measurements were compared with manual measurements. The tumor thickness measurements of different observers were highly correlated (r > or = 0.99); however, the 95% limits of agreement for relative inter-observer difference spanned a range of 30%. Tumor thickness measurements generated by the computer algorithms also correlated highly with the average of observer measurements (r > or = 0.93). We have developed computerized techniques for the measurement of mesothelioma tumor thickness in CT scans. These techniques achieved varying levels of agreement with measurements made by human observers.

Adult↗

PubMed2004

Automated matching of temporally sequential CT sections.

In the evaluation of patient response to therapy through measurements on thoracic computed tomography (CT) scans, the selection of anatomically equivalent sections in temporally sequential scans is required. We developed an automated method based on normalized mutual information (NMI) to expedite the selection of anatomically equivalent sections. The method requires as input two temporally sequential CT scans from the same patient. A specified section from the baseline scan is then compared with the sections of a follow-up scan. Each section in the follow-up scan is successively translated and rotated relative to the baseline section, and NMI is calculated. The section in the follow-up scan that yields the highest NMI with respect to the baseline section is selected as the matching section. The method was applied to a database of 22 pairs of temporally sequential CT scans from mesothelioma patients. Five observers manually selected their choice of the best anatomically matched section for each of three predetermined sections in the 22 baseline scans, and the range of selected sections was recorded. The automated method was applied to the same baseline sections to determine the computer-based anatomically matched sections in the corresponding follow-up scan. The automated process was performed using both original CT sections and sections automatically segmented so that only intrathoracic pixels contributed to NMI calculations. The accuracy of the automated method was quantified on a section-by-section basis by comparison with the range of sections selected by the observers. The automated method without segmentation selected equivalent sections within the observers' range for 54 of the 66 matching tasks (81.8%). An 11% improvement was achieved when thoracic segmentation was performed as a pre-processing step.

Adult↗

PubMed2004

Lung image database consortium: developing a resource for the medical imaging research community.

To stimulate the advancement of computer-aided diagnostic (CAD) research for lung nodules in thoracic computed tomography (CT), the National Cancer Institute launched a cooperative effort known as the Lung Image Database Consortium (LIDC). The LIDC is composed of five academic institutions from across the United States that are working together to develop an image database that will serve as an international research resource for the development, training, and evaluation of CAD methods in the detection of lung nodules on CT scans. Prior to the collection of CT images and associated patient data, the LIDC has been engaged in a consensus process to identify, address, and resolve a host of challenging technical and clinical issues to provide a solid foundation for a scientifically robust database. These issues include the establishment of (a) a governing mission statement, (b) criteria to determine whether a CT scan is eligible for inclusion in the database, (c) an appropriate definition of the term qualifying nodule, (d) an appropriate definition of "truth" requirements, (e) a process model through which the database will be populated, and (f) a statistical framework to guide the application of assessment methods by users of the database. Through a consensus process in which careful planning and proper consideration of fundamental issues have been emphasized, the LIDC database is expected to provide a powerful resource for the medical imaging research community. This article is intended to share with the community the breadth and depth of these key issues.

Biomedical Research↗

PubMed2003

Image annotation for conveying automated lung nodule detection results to radiologists.

RATIONALE AND OBJECTIVES: The author investigated the ability of automated techniques to convey the results of an automated lung nodule detection method for human visualization. MATERIALS AND METHODS: Automated nodule detection begins with gray-level thresholding techniques to create a segmented lung volume within which nodule candidates are identified. Morphologic and gray-level features are computed for each candidate. To distinguish between candidates that represent actual nodules and those that represent non-nodules, a rule-based scheme is combined with linear discriminant analysis. For output visualization, final detection results are represented as circles around computer-detected structures in a single section in which each structure appears. Consequently, an inappropriate choice of section could result in an actual nodule detected by the computer but not properly indicated to the radiologist, thus reducing the potential positive impact of that detection on the radiologist's decision-making process. RESULTS: The automated nodule detection method achieved 71% sensitivity with 0.5 false positives per section on 38 CT scans; however, when these results were converted to annotations on the images output for human visualization, only 91% of the computer-detected true-positive nodules received annotations that encompassed a portion of the actual nodule. Thus, the "effective sensitivity" of the automated detection method was reduced. CONCLUSION: The "effective sensitivity" of an automated lung nodule detection system considers the eventual human interaction with system output. Differences between reported computer sensitivity and "effective sensitivity" may be reduced through proper consideration of the assessment of "truth," of the manner in which computer results are scored, and of the complete segmentation of candidates for automated nodule detection.

Diagnosis, Computer-Assisted↗