Biomedical subjects

Swapan K Ghosh

Publications and source records attributed to Swapan K Ghosh.

At least 19 recordsLinked to original sources

PubMed2006

Dispersion stability of colloids in sub- and supercritical water.

Dispersion stability of colloids has been investigated in sub- and supercritical water by measuring the hydrodynamic diffusion coefficients of the particles by means of dynamic light scattering. It is interestingly found that coagulation of the colloids in sub- and supercritical water is a universal phenomenon irrespective of the material of the colloids. Highly charged colloids were found to be more stable in water against high temperature. Numerical analysis reveals that the stability of the colloids at elevated temperature and pressure is primarily governed by the temperature dependence of the dielectric constant of the medium. The effect of the temperature dependence of the ion product of water (pKw) was found to be very little. Surface charge density and Stern potential may change with respect to temperature due to the readjustment of the ion concentration in the diffuse layer through the enhanced ion product and reduced dielectric constant of water. These are the secondary causes of the particle coagulations in sub- and supercritical water.

Journal Article↗

PubMed2006

Bursts in single-file motion mediated conduction.

We present a cellular automaton (CA) model of particles in a single-file motion with free particle exchange at the boundaries of a one-dimensional channel connected to two infinite reservoirs in order to study the self-transmission of particles with excluded mutual passage. The parallel, local and homogeneous rule sets of the CA algorithm consider two different interactions of varying strength between particles, without any specific particle-channel interaction. CA model results suggest that one hallmark of single-file motion is the conduction bursts at a particular time scale, which have thus far only been discovered for hydrogen bond networked water translocation. The cumulative transport probabilities of particles through single-file channels of different length follow a single profile, which can be obtained through proper scaling of time. The universal features of our results suggest new experiments in single-file channel with fluids other than water.

Journal Article↗

PubMed2006

Hydrogen bonding in substituted formic acid dimers.

The hydrogen-bonded dimers of formic acid derivatives XCOOH (X = H, F, Cl, and CH3) have been investigated using density functional theory (B3LYP) and second-order Møller-Plesset perturbation (MP2) methods, with the geometry optimization carried out using 6-311++G(2d,2p) basis set. The dimerization energies calculated using aug-cc-pVXZ (with X = D and T) basis have been extrapolated to infinite basis set limit using the standard methodology. The results indicate that the fluorine-substituted formic acid dimer is the most stable one in comparison to the others. Topological analysis carried out using Bader's atoms in molecules (AIM) theory shows good correlation of the values of electron density and its Laplacian at the bond critical points (BCP) with the hydrogen bond length in the dimers. Natural bond orbital (NBO) analysis carried out to study the charge transfer from the proton acceptor to the antibonding orbital of the X-H bond in the complexes reveals that most of the dimers are associated with conventional H-bonding except a few, where improper blue-shifting hydrogen bonds are found to be present.

Chemistry, Physical↗

PubMed2006

Phytol-based novel adjuvants in vaccine formulation: 1. assessment of safety and efficacy during stimulation of humoral and cell-mediated immune responses.

BACKGROUND: Vaccine efficacy depends significantly on the use of appropriate adjuvant(s) in the formulation. Phytol, a dietary diterpene alcohol, is similar in structure to naturally occurring isoprenoid adjuvants; but little is known of its adjuvanticity. In this report, we describe the relative safety and efficacy of phytol and its hydrogenated derivative PHIS-01 compared to commercial adjuvants. METHODS: We tested adjuvant properties using a formulation consisting of either a hapten, phthalate-conjugated to a protein, keyhole limpet hemocyanin (KLH), or ovalbumin (OVA) emulsified with the test adjuvants in mice without any surfactant. Humoral immunity was assessed in terms of titer, specificity, and isotypic profiles. The effect on cell-mediated immunity was studied by assaying the induction of either OVA- or B-lymphoma-specific cytotoxic T-lymphocyte (CTL) activity. RESULTS AND DISCUSSION: The phytol compounds, particularly PHIS-01, elicit increased titers of all major IgG subclasses, especially IgG2a. Unlike commercial adjuvants, both phytol compounds are capable of inducing specific cytotoxic effector T cell responses specific to both OVA and B-lymphoma tested. Phytols as adjuvants are also distinctive in that they provoke no adverse anti-DNA autoimmune response. Intraperitoneally administered phytol is comparable to complete Freund's adjuvant in toxicity in doses over 40 ug/mouse, but PHIS-01 has no such toxicity. CONCLUSION: These results and our ongoing studies on antibacterial immunity show that phytol and PHIS-01 are novel and effective adjuvants with little toxicity.

Journal Article↗

PubMed2006

Phytol-based novel adjuvants in vaccine formulation: 2. Assessment of efficacy in the induction of protective immune responses to lethal bacterial infections in mice.

BACKGROUND: Adjuvants are known to significantly enhance vaccine efficacy. However, commercial adjuvants often have limited use because of toxicity in humans. The objective of this study was to determine the comparative effectiveness of a diterpene alcohol, phytol and its hydrogenated derivative PHIS-01, relative to incomplete Freund's adjuvant (IFA), a commonly used adjuvant in augmenting protective immunity in mice against E. coli and S. aureus, and in terms of inflammatory cytokines. METHODS: Vaccines, consisting of heat-attenuated E. coli or S. aureus and either of the two phytol-based adjuvants or IFA, were tested in female BALB/c mice. The vaccines were administered intraperitoneally at 10-day intervals. The efficacy of the phytol and PHIS-01, as compared to IFA, was assessed by ELISA in terms of anti-bacterial antibody and inflammatory cytokines. We also examined the ability of the vaccines to induce specific protective immunity by challenging mice with different doses of live bacteria. RESULTS AND DISCUSSION: IFA, phytol, and PHIS-01 were equally efficient in evoking anti-E. coli antibody response and in providing protective immunity against live E. coli challenges. In contrast, the antibody response to S. aureus was significant when PHIS-01 was used as the adjuvant. However, in terms of the ability to induce protective immunity, phytol was most effective against S. aureus. Moreover, during challenges with live E. coli and S. aureus immune mice produced much less IL-6, the mediators of fatal septic shock syndromes. CONCLUSION: Our results show that vaccine formulations containing phytol and PHIS-01 as adjuvants confer a robust and protective immunity against both Gram-negative and Gram-positive bacteria without inducing adverse inflammatory cytokine due to IL-6.

Journal Article↗

PubMed2006

Viscosity measurements of water at high temperatures and pressures using dynamic light scattering.

The application of dynamic light scattering to measure viscosity of water at high temperatures and pressures is demonstrated. Viscosity was obtained from the translational diffusion coefficient of probe particles dispersed in the medium by the Einstein-Stokes relationship. Measurements were carried out with polystyrene latex, colloidal silica, and colloidal gold. Under a constant pressure of 25 MPa, good agreement was found between the measured and calculated viscosities up to 275 degrees C with the polystyrene latex, 200 degrees C with the colloidal silica, and 297 degrees C with the colloidal gold. It was found that failure of the measurements at high temperatures is ascribed to change in either the dispersion stability or chemical stability of the probe particles. The present results indicate that the technique could also be used for other supercritical fluids having high critical temperature and pressure, such as methanol (T(c) = 239.4 degrees C, P(c) = 8.1 MPa) and ethanol (T(c) = 243.1 degrees C, P(c) = 6.4 MPa).

Chemistry, Physical↗

PubMed2005

Electron density and energy decomposition analysis in hydrogen-bonded complexes of azabenzenes with water, acetamide, and thioacetamide.

Ab initio and density functional theoretical studies on hydrogen-bonded complexes of azabenzenes with water, acetamide, and thioacetamide have been carried out to explore the controversy involved in the relative order of their stability in a systematic way. The interaction energies of these complexes have been analyzed using the Morokuma energy decomposition method, and the nature of the various hydrogen bonds formed has been investigated through topological aspects using Bader's atom in a molecule (AIM) theory. Morokuma energy decomposition analysis reveals that the major contributions to the energetics are from the polarization (PL) and charge transfer (CT) energies. From the calculated topological results, excellent linear correlation is shown to exist between the hydrogen-bond length, electron density [rho(r)], and its Laplacian [nabla(2)rho(r)] at the bond critical points for all the complexes considered.

Acetamides↗

PubMed2005

Universal scaling laws of diffusion: application to liquid metals.

This work focuses on the universal scaling laws, which relate scaled diffusivity to excess entropy in fluids and their mixtures. The derivation of the new scaling law for diffusivity proposed recently [A. Samanta, Sk. M. Ali, and S. K. Ghosh, Phys. Rev. Lett. 92, 145901 (2004)] is discussed in details highlighting the nature of approximations involved. Also the applicability of the scaling law is extended to a new class of liquids, viz., liquid metals. The results calculated based on the scaling laws are shown to be in very good agreement with the simulation results for liquid Rb and Cs metals along the liquid-vapor coexistence curve corresponding to a wide variation of temperature and density. The new universal scaling law discussed here is superior to the earlier empirically proposed scaling laws and provides a very simple route to calculate a dynamical quantity such as diffusivity from an equilibrium property such as the radial distribution function.

Journal Article↗

PubMed2005

Effect of attractive interactions on the structure of polymer melts confined between surfaces: a density-functional approach.

A density-functional theory is presented to study the structure of polymers, having attractive interactions, confined between attractive surfaces. The theory treats the ideal-gas free-energy functional exactly and uses weighted density approximation for the hard-chain contribution to the excess free-energy functional. The bulk interactions of freely jointed hard spheres are obtained from generalized Flory equation of state and the attractive interactions are calculated using the direct correlation function obtained from the polymer reference interaction site model theory along with the mean spherical approximation closure. The theoretical predictions are found to be in quite good agreement with the Monte Carlo simulation results for varying densities, chain lengths, and different interaction potentials. The results confirm important implications of using different approximations for the hard-sphere and attractive interactions.

Journal Article↗

PubMed2005

Autoreactive responses to environmental factors: 3. Mouse strain-specific differences in induction and regulation of anti-DNA antibody responses due to phthalate-isomers.

Little is known of the role of specific environmental factors in promoting autoimmune disorders such as systemic lupus erythematosus (SLE). This study addresses how exposure to phthalates, common environmental factors in foods, and biomedical devices could affect the immune functions of resistant and autoimmune-prone mice. We have previously shown that immunization with ortho-phthalate evokes anti-DNA antibody in BALB/c and NZB/W F1 mice, but only the latter suffer from nephritis and high mortality. BALB/c mice, in contrast, develop idiotype-specific CD8+ suppressor T cells downregulating autoreactive B cells. Here we report that all phthalate-isomers (ortho-, meta- and para-) are capable of inducing anti-DNA antibody responses and SLE-like syndromes. Kidney pathology worsens in NZB/W F1 and to a degree, in C57BL/6 mice after repeated exposure to phthalates. Only BALB/c and DBA/2 overcome adverse autoreactivity by induction of Ts cells; but in vivo depletion of these T cells renders these strains susceptible to autoreactivity. Anti-DNA antibodies in affected NZB/W F1 are largely IgG2a-type, while in BALB/c, DBA/2, and C57BL/6 mice IgG1-type. This is further corroborated by cytokine analyses that imply corresponding Th1/Th2 involvement. In summary, the commonly used phthalates appear harmful to susceptible strains, while BALB/c and DBA/2 are spared due to induction of Ts cells.

Animals↗

PubMed2004

Structure of short polymers at interfaces: a combined simulation and theoretical study.

The structure of polymers confined between surfaces is studied using computer simulation and a density functional approach. The simple model system considers the polymer molecule as a pearl necklace of freely jointed hard spheres, having attractions among the beads, confined between attractive surfaces. This approach uses the universality of the free-energy functional to obtain the self-consistent field required in the single chain simulation. The second-order direct correlation function for the uniform bulk fluid required as input has been calculated from the reference interaction site model integral equation theory using mean spherical approximation. The theoretical results are shown to compare well with the Monte Carlo simulation results for varying densities, chain lengths, and with different attractive interaction parameters. The simulation results on the conformational properties give important indications regarding the behavior of chains as they approach the surfaces.

Journal Article↗

PubMed2004

A novel phosphoprotein is induced during bone marrow commitment to dendritic cells.

Dendritic cells (DCs) play an important role in vertebrate immunity, but little is known of the molecular events associated with their development from bone marrow (BM). This report describes induction of a signature protein marking BM commitment to DCs. Using a standard procedure, DCs were generated from BM by cultivation in vitro. Appropriate phenotypic monitoring was done primarily by immunofluorescence, and polyclonal antibody reagents were developed against immature DC lysates. Using one specific antibody reagent, we identified, purified, and sequenced a unique cytosolic phosphoprotein DP58 that occurs within 30 min during BM commitment to DCs. Its sequence matches with a computationally predicted Riken cDNA (GenBank Accession No. XP_138799), and a specific anti-DP58 peptide antibody was developed for further characterization. The study suggests that DP58 induction signals distinct pathway(s) leading to early DC progenitors that may be generated and propagated for a short period in vitro.

Amino Acid Sequence↗

PubMed2004

Magic clusters MAu4 (M=Ti and Zr) and their dimers: how magic are they?

The stability of closed shell bimetallic magic clusters MAu(4) (M=Ti and Zr) is investigated theoretically through ab initio molecular orbital calculations. Both these clusters have tetrahedral structures and are found to be associated with large values of the ionization potential, HOMO-LUMO gap as well as the binding energies, which are characteristic of the magic clusters. However, the cluster-cluster interaction energy corresponding to a dimer formation is found to be unusually high ( approximately 5-7 eV) in contradiction to the usual properties of a magic cluster and is attributed to a 3-center-2-electron M-Au-M type bridge bonding as well as aurophilic attraction. Gross geometrical features of the individual clusters are, however, mostly retained in the dimer, thus satisfying the basic requirements for the cluster-assembled materials. This work would have important implications in the design of novel cluster-based nanomaterials for various nanoscale applications.

Journal Article↗

PubMed2004

New universal scaling laws of diffusion and Kolmogorov-Sinai entropy in simple liquids.

A new universal scaling law relating the self-diffusivities of the components of a binary fluid mixture to their excess entropies is derived using mode coupling theory. These scaling laws yield numerical results, for a hard sphere as well as Lennard-Jones fluid mixtures, in excellent agreement with simulation results even at a low density region, where the empirical scaling laws of Dzugutov [Nature (London) 381, 137 (1996)]] and Hoyt, Asta, and Sadigh [Phys. Rev. Lett. 85, 594 (2001)]] fail completely. A new scaling law relating the Kolmogorov-Sinai entropy to the excess entropy is also obtained.

Journal Article↗

PubMed2004

Static dipole polarizability and binding energy of sodium clusters Nan (n=1-10): A critical assessment of all-electron based post Hartree-Fock and density functional methods.

A systematic all electron post Hartree-Fock as well as density functional theory (DFT) based calculations for the polarizability and binding energy of sodium metal clusters have been performed and an in-depth analysis of the discrepancy between the experimental and theoretical results is presented. A systematic investigation for the assessment of different DFT exchange-correlation functionals in predicting the polarizability values has also been reported. All the pure DFT functionals have been found to considerably underestimate the calculated polarizability values as compared to the MP2 results. DFT calculations using the full Hartree-Fock exchange along with one-parameter progressive correlation functional have, however, been shown to yield results in good agreement with the MP2 and experimental results. The possible sources of error present in the experimental measurements as well as in the different theoretical methods have also been analyzed. One of the most important conclusions of the present study is that the effect of electron correlation plays a significant role in determining the polarizability of the clusters and the MP2 method can be considered to be one of the most reliable methods for their prediction. It has also been noted that the polarizability value of the lower member clusters (Na2 and Na4) calculated by highly sophisticated methods such as, CCSD and CCSD(T) are found to be very close to the corresponding MP2 values. The polarizability and the binding energy of the clusters are found to be inversely related to each other and their correlation is rationalized by invoking the minimum polarizability principle. A good linear correlation between the polarizability and volume of the cluster has also been found to exist.

Journal Article↗

PubMed2004

Autoreactive responses to an environmental factor. 2. Phthalate-induced anti-DNA specificity is downregulated by autoreactive cytotoxic T cells.

An environmental factor (phthalate) was shown, in our previous study, to induce serum anti-DNA responses in BALB/c, NZB and lupus-prone NZB/W F1 mice. Out of such anti-phthalate responses, cross-reactive populations were identified that strongly bind phthalate, DNA, or both. A phthalate-specific BALB/c monoclonal antibody, 2C3-Ig (gamma1,kappa), showed considerable affinity for DNA and had extensive sequence homology with the heavy and light chain variable regions of a known anti-DNA immunoglobulin, BV04-01, from lupus-prone NZB/W F1 mice. This study was initiated to address how BALB/c mice, but not NZB/W F1 mice, are protected from these adverse autoreactive B cells. Using 2C3 hybridoma cells as the prototype autoreactive BALB/c B cell, we determined whether its DNA-binding monoclonal antibody would induce any regulatory cell-mediated immune responses. Synthetic idiopeptides corresponding to the heavy and light chain variable regions of 2C3-Ig were found to be effective at inducing specific effector cells in BALB/c mice, but not in lupus-prone F1 mice. The splenocytes from BALB/c mice incubated in vitro with the idiopeptides, particularly the complementarity-determining region 1 (VL1) of the 2C3-Ig light chain, showed significant proliferative and cytolytic responses. A CD8+ cytotoxic T-lymphocyte (CTL) response was elicited that recognized the VL1 peptide presented by the Kd allele, and affected the growth of 2C3 cells. In vivo depletion of CD8+ T cells in BALB/c mice significantly decreased this CTL activity but increased the anti-DNA humoral response. These results suggest that autoreactive CTLs are induced in non-autoimmune prone mice as a mechanism to downregulate self-reactive B cells.

Amino Acid Sequence↗

PubMed2003

Coherent and incoherent trapping of a diffusion-assisted system in the presence of an external periodic field.

Field induced trapping on a line segment of a diffusion-driven system is studied with an aim to gain an insight into the occurrence of coherent stochastic resonance, which is thoroughly explored as synchronized mean-free passages to the traps. Synchronization (coherence) between the external bias, the noise in the system and the temporal trapping events is found to attain an optimum value by increasing the forcing frequency towards the relevant resonant frequency, revealing a minimum in the nonmonotonic mean-free-passage time (MFPT) to trapping. The MFPT at a given forcing frequency, is also nonmonotonic when considered as a function of the diffusion coefficient of the medium, and reveals a maximum exhibiting the least synchronization effect (incoherent trapping).

Journal Article↗

PubMed2003

Autoreactive responses to an environmental factor: 1. phthalate induces antibodies exhibiting anti-DNA specificity.

Environmental factors have been implicated in the induction of autoimmune disorders. We report here that a common chemical, phthalate, used widely in synthetic polymers and cosmetics induces serum anti-self DNA antibodies in BALB/c, NZB and autoimmune-prone NZB/W F1 mice. The latter group experiences a high mortality, and significantly higher anti-DNA antibody levels along with nephritis and other histopathologic changes in kidney. Comparison of amino acid sequences of an anti-phthalate BALB/c B-cell hybrid, 2C3 with the known database at the National Center for Biotechnology Information reveals a striking homology between the variable regions of 2C3-Ig (gamma1, kappa) and an anti-DNA antibody, BV04-01 (gamma2b,kappa) isolated from the lupus-prone NZB/W F1 mice. The homology is 98% for kappa light chain and 70% for gamma heavy chain. Like 2C3-Ig, BV04-01 also has specificity for d(pT)4. Furthermore, the light chains of both 2C3-Ig and BV04-01 are products of Vkappa1 gene. To understand the nature of anti-phthalate responses in general, hybridomas generated from phthalate-keyhole limpet haemocyanin-primed BALB/c splenocytes were characterized. The study identifies cross-reactive populations that strongly bind phthalate, DNA, or both. Of the 14 hybridomas evaluated, six express the same Vkappa1 gene-derived light chain as 2C3, and bind both phthalate and ds and ss-DNA. They specifically recognize the oligonucleotides, d(pT)4, and d(pT)10. Additionally, when antisera raised against idiopeptides corresponding to 2C3-Ig hypervariable regions are allowed to react with 2C3-Ig, their binding is blocked specifically by both d(pT)4 and phthalate. This study clearly demonstrates that phthalate exposure leads to activation of a significant number of autoreactive B-cells, with the consequence of a significant pathogenic progression in susceptible NZB/W F1 mice but not in non-autoimmune-prone BALB/c.

Amino Acid Sequence↗