Biomedical subjects

Tree of Life Core Informatics collective

Publications and source records attributed to Tree of Life Core Informatics collective.

At least 37 records · Page 2Linked to original sources

PubMed2026

The genome sequence of the Mallow Seed Moth, Platyedra subcinerea (Haworth, 1828) (Lepidoptera: Gelechiidae).

We present a genome assembly from an individual male Platyedra subcinerea (Mallow Seed Moth; Arthropoda; Insecta; Lepidoptera; Gelechiidae). The assembly contains two haplotypes with total lengths of 555.70 megabases and 555.31 megabases. Most of haplotype 1 (99.98%) is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.25 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Lepidoptera↗

PubMed2026

The genome sequence of an ichneumonid wasp, Promethes sulcator (Gravenhorst, 1829) (Hymenoptera: Ichneumonidae).

We present a genome assembly from an individual female Promethes sulcator (ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence has a total length of 278.74 megabases. Most of the assembly (99.67%) is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 29.43 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Hymenoptera↗

PubMed2026

The genome sequence of Hypericum androsaemum L., 1753 (Malpighiales: Hypericaceae).

We present a genome assembly of Hypericum androsaemum (Tutsan; Streptophyta; Magnoliopsida; Malpighiales; Hypericaceae). The genome sequence has a total length of 384.54 megabases. Most of the assembly (99.96%) is scaffolded into 20 chromosomal pseudomolecules. The mitochondrial sequences have lengths of 138.63, 75.57, 98.15 and 103.38 kilobases and the plastid genome assembly has a length of 165.0 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Hypericum androsaemum↗

PubMed2026

The genome sequence of the 16-spot Ladybird, Tytthaspis sedecimpunctata (Linnaeus, 1758) (Coleoptera: Coccinellidae).

We present a genome assembly from an individual male Tytthaspis sedecimpunctata (16-spot Ladybird; Arthropoda; Insecta; Coleoptera; Coccinellidae). The genome sequence has a total length of 355.68 megabases. Most of the assembly (88.7%) is scaffolded into 10 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled, with a length of 18.38 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

16-spot Ladybird↗

PubMed2026

The genome sequence of the Holly Tortrix, Rhopobota naevana (Hubner, 1817) (Lepidoptera: Tortricidae).

We present a genome assembly from an individual male Rhopobota naevana (Holly Tortrix; Arthropoda; Insecta; Lepidoptera; Tortricidae). The genome sequence has a total length of 581.80 megabases. Most of the assembly (99.48%) is scaffolded into 28 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled, with a length of 16.5 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Holly Tortrix↗

PubMed2026

The genome sequence of the Silver Colonel, Odontomyia argentata (Fabricius, 1794) (Diptera: Stratiomyidae).

We present a genome assembly from an individual female Odontomyia argentata (Silver Colonel; Arthropoda; Insecta; Diptera; Stratiomyidae). The assembly contains two haplotypes with total lengths of 1 950.48 megabases and 1 937.58 megabases. Most of haplotype 1 (95.92%) is scaffolded into 6 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.0 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Diptera↗

PubMed2026

The genome sequence of Veronica verna L., 1753 (Lamiales: Plantaginaceae).

We present a genome assembly of Veronica verna (Spring Speedwell; Streptophyta; Magnoliopsida; Lamiales; Plantaginaceae). The genome sequence has a total length of 463.88 megabases. Most of the assembly (98.85%) is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial sequence has a length of 311.81 kilobases and the plastid genome assembly has a length of 149.82 kilobases. Gene annotation of this assembly on Ensembl identified 22 903 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Asterales↗

PubMed2026

The genome sequence of a muscid fly, Lispocephala verna (Fabricius, 1794) (Diptera: Muscidae).

We present a genome assembly from an individual female Lispocephala verna (muscid fly; Arthropoda; Insecta; Diptera; Muscidae). The assembly contains two haplotypes with total lengths of 987.71 megabases and 934.62 megabases. Most of haplotype 1 (95.8%) is scaffolded into 5 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.34 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Diptera↗

PubMed2026

The genome sequence of Gnaphalium uliginosum L., 1753 (Asterales: Asteraceae).

We present a genome assembly of Gnaphalium uliginosum (marsh cudweed; Streptophyta; Magnoliopsida; Asterales; Asteraceae). The genome sequence has a total length of 354.38 megabases. Most of the assembly (98.86%) is scaffolded into 7 chromosomal pseudomolecules. The mitochondrial sequence has a length of 195.0 kilobases and the plastid genome assembly has a length of 152.8 kilobases. Gene annotation of this assembly on Ensembl identified 24 149 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Asterales↗

PubMed2026

The genome sequence of Acaena ovalifolia Ruiz & Pav., 1798 (Rosales: Rosaceae).

We present a genome assembly of Acaena ovalifolia (Two-spined Acaena; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The assembly consists of two haplotypes with total lengths of 687.12 megabases and 687.19 megabases. Most of haplotype 1 (99.59%) is scaffolded into 21 chromosomal pseudomolecules. Most of haplotype 2 (99.12%) is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial sequence has a length of 365.03 kilobases and the plastid genome assembly has a length of 156.05 kilobases. Gene annotation of this assembly on Ensembl identified 51 813 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Acaena ovalifolia↗

PubMed2026

The genome sequence of Schoenoplectus triqueter (L.) Palla, 1888 (Poales: Cyperaceae).

We present a genome assembly of Schoenoplectus triqueter (Triangular Club-rush; Streptophyta; Magnoliopsida; Poales; Cyperaceae). The genome sequence has a total length of 580.26 megabases. Most of the assembly (98.75%) is scaffolded into 21 chromosomal pseudomolecules. Five mitochondrial sequences and the plastid genome were also assembled. Gene annotation of this assembly on Ensembl identified 31 746 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Poales↗

PubMed2026

The genome sequence of the Royal Mantle, Catarhoe cuculata (Hufnagel, 1767) (Lepidoptera: Geometridae).

We present a genome assembly from an individual male Catarhoe cuculata (Royal Mantle; Arthropoda; Insecta; Lepidoptera; Geometridae). The assembly contains two haplotypes with total lengths of 297.56 megabases and 297.17 megabases. Most of haplotype 1 (99.41%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.67 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Catarhoe cuculata↗

PubMed2026

The genome sequence of the brown tree ant, Lasius brunneus (Latreille, 1798) (Hymenoptera: Formicidae).

We present a genome assembly from an individual female Lasius brunneus (Brown Ant; Arthropoda; Insecta; Hymenoptera; Formicidae). The genome sequence has a total length of 264.94 megabases. Most of the assembly (97.62%) is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 18.03 kilobases. Gene annotation of this assembly on Ensembl identified 15 125 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Hymenoptera↗

PubMed2026

The genome sequence of a blow fly, Melanomya nana (Meigen, 1826) (Diptera: Calliphoridae).

We present a genome assembly from an individual male Melanomya nana (blow fly; Arthropoda; Insecta; Diptera; Calliphoridae). The assembly contains two haplotypes with total lengths of 1 391.98 megabases and 1 424.34 megabases. Most of haplotype 1 (99.62%) is scaffolded into 5 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 27.12 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Diptera↗

PubMed2026

The genome sequence of Quercus cerris L., 1753 (Fagales: Fagaceae).

We present a genome assembly of Quercus cerris (Turkey oak; Streptophyta; Magnoliopsida; Fagales; Fagaceae). The genome sequence has a total length of 777.39 megabases. Most of the assembly (99.89%) is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial sequences have lengths of 380.47 and 15.0 kilobases and the plastid genome assembly has a length of 161.2 kilobases. Gene annotation of this assembly on Ensembl identified 25 805 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Fagales↗

PubMed2026

The genome sequence of the lesser white-fronted goose, Anser erythropus (Linnaeus, 1758) (Anseriformes: Anatidae).

We present a genome assembly from an individual female Anser erythropus (lesser white-fronted goose; Chordata; Aves; Anseriformes; Anatidae). The assembly contains two haplotypes with total lengths of 1 339.88 megabases and 1 168.02 megabases. Most of haplotype 1 (88.67%) is scaffolded into 41 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.74 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Anser erythropus↗

PubMed2026

The genome sequence of the Eurasian common lizard, Zootoca vivipara (von Jacquin, 1787) (Squamata: Lacertidae).

We present a genome assembly from an individual male Zootoca vivipara (Eurasian common lizard; Chordata; Lepidosauria; Squamata; Lacertidae). The assembly contains two haplotypes with total lengths of 1 424.51 megabases and 1 423.70 megabases. Most of the haplotype 1 assembly (99.49%) and the haplotype 2 assembly (99.42%) are each scaffolded into 18 chromosomal pseudomolecules, including the Z 1 and Z 2 sex chromosomes. The mitochondrial genome has also been assembled, with a length of 17.09 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Eurasian common lizard↗

PubMed2026

The genome sequence of a hoverfly , Neoascia tenur (Harris, 1780) (Diptera: Syrphidae).

We present a genome assembly from an individual femal Neoascia tenur (hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence has a total length of 491.77 megabases. Most of the assembly (97.23%) is scaffolded into 4 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 16.31 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Diptera↗