Biomedical subjects

Tree of Life Core Informatics collective

Publications and source records attributed to Tree of Life Core Informatics collective.

At least 55 records · Page 3Linked to original sources

PubMed2026

The genome sequence of Vicia sativa L., 1753 (Fabales: Fabaceae).

We present a genome assembly of Vicia sativa (Narrowleaf Vetch; Streptophyta; Magnoliopsida; Fabales; Fabaceae). The assembly consists of two haplotypes with total lengths of 1 748.92 megabases and 1 751.13 megabases. Most of haplotype 1 (98.95%) is scaffolded into 6 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial sequence has a length of 405.76 kilobases and the plastid genome assembly has a length of 124.62 kilobases. Gene annotation of this assembly on Ensembl identified 11 105 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Fabales↗

PubMed2026

The genome sequence of Carex sylvatica Huds., 1762 (Poales: Cyperaceae).

We present a genome assembly of Carex sylvatica (Wood-sedge; Streptophyta; Magnoliopsida; Poales; Cyperaceae). The genome sequence has a total length of 363.24 megabases. Most of the assembly (99.79%) is scaffolded into 29 chromosomal pseudomolecules. The mitochondrial sequences have lengths of 1715.64, 74.78 and 77.37 kilobases and the plastid genome assembly has a length of 215.14 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Carex sylvatica↗

PubMed2026

The genome sequence of Prunus padus L., 1753 (Rosales: Rosaceae).

We present a genome assembly of Prunus padus (bird cherry; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequence has a total length of 454.49 megabases. Most of the assembly (97.36%) is scaffolded into 16 chromosomal pseudomolecules. The mitochondrial sequences have lengths of 280.28 and 155.92 kilobases and the plastid genome assembly has a length of 158.96 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Prunus padus↗

PubMed2026

The genome sequence of the Taiga Bean Goose, Anser fabalis (Latham, 1787) (Anseriformes: Anatidae).

We present a genome assembly from an individual male Anser fabalis (Taiga Bean-Goose; Chordata; Aves; Anseriformes; Anatidae). The genome sequence has a total length of 1 316.27 megabases. Most of the assembly (87.89%) is scaffolded into 38 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled, with a length of 16.74 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Anser fabalis↗

PubMed2026

The genome sequence of the Lesser noctule, Nyctalus leisleri (Kuhl, 1817) (Chiroptera: Vespertilionidae).

We present a genome assembly from an individual male Nyctalus leisleri (Leisler's bat; Chordata; Mammalia; Chiroptera; Vespertilionidae). The assembly contains two haplotypes with total lengths of 2 226.32 megabases and 2 021.25 megabases. Most of haplotype 1 (88.57%) is scaffolded into 23 chromosomal pseudomolecules, including the X and Y sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.23 kilobases. Gene annotation of this assembly on Ensembl identified 18 985 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Chiroptera↗

PubMed2026

The genome sequence of Euphorbia lathyris L., 1753 (Malpighiales: Euphorbiaceae).

We present a genome assembly of Euphorbia lathyris (caper spurge; Streptophyta; Magnoliopsida; Malpighiales; Euphorbiaceae). The genome sequence has a total length of 1 020.39 megabases. Most of the assembly (99.88%) is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial sequences have lengths of 886.36, 41.02, 86.31 and 32.73 kilobases and the plastid genome assembly has a length of 163.75 kilobases. Gene annotation of this assembly on Ensembl identified 26 361 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Euphorbia lathyris↗

PubMed2026

The genome sequence of Sphagnum contortum Schultz, 1819 (Sphagnales: Sphagnaceae).

We present a genome assembly of Sphagnum contortum (twisted bog-moss; Streptophyta; Sphagnopsida; Sphagnales; Sphagnaceae). The genome sequence has a total length of 370.55 megabases. Most of the assembly (99.46%) is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial sequence has a length of 141.7 kilobases and the plastid genome assembly has a length of 140.11 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Sphagnales↗

PubMed2026

The genome sequence of Sphagnum tenellum (Brid.) Bory, 1819 (Sphagnales: Sphagnaceae).

We present a genome assembly of Sphagnum tenellum (soft bog-moss; Streptophyta; Sphagnopsida; Sphagnales; Sphagnaceae). The genome sequence has a total length of 386.16 megabases. Most of the assembly (98.04%) is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial sequence has a length of 141.31 kilobases and the plastid genome assembly has a length of 140.16 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Sphagnales↗

PubMed2026

The genome sequence of Cardamine flexuosa With., 1796 (Brassicales: Brassicaceae).

We present a genome assembly of Cardamine flexuosa (Wavy Bitter-cress; Streptophyta; Magnoliopsida; Brassicales; Brassicaceae). The genome sequence has a total length of 204.54 megabases. Most of the assembly (97.53%) is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial sequence has a length of 299.98 kilobases and the plastid genome assembly has a length of 153.92 kilobases. Gene annotation of this assembly on Ensembl identified 24 305 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Brassicales↗

PubMed2026

The genome sequence of the Common Quaker, Orthosia cerasi (Fabricius, 1775) (Lepidoptera: Noctuidae).

We present a genome assembly from an individual female Orthosia cerasi (Common Quaker; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence has a total length of 1 022.21 megabases. Most of the assembly (99.88%) is scaffolded into 29 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled, with a length of 15.39 kilobases. Gene annotation of this assembly on Ensembl identified 15 702 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Common Quaker↗

PubMed2026

The genome sequence of the Downland Conch, Aethes tesserana (Denis & Schiffermüller) , 1775 (Lepidoptera: Tortricidae).

We present a genome assembly from an individual male Aethes tesserana (Downland Conch; Arthropoda; Insecta; Lepidoptera; Tortricidae). The assembly contains two haplotypes with total lengths of 486.12 megabases and 482.92 megabases. Most of haplotype 1 (99.81%) is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.54 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Aethes tesserana↗

PubMed2026

The genome sequence of the Bluebell moth, Eana incanana (Stephens, 1852) (Lepidoptera: Tortricidae).

We present a genome assembly from an individual male Eana incanana (Bluebell moth; Arthropoda; Insecta; Lepidoptera; Tortricidae). The assembly contains two haplotypes with total lengths of 372.33 megabases and 373.40 megabases. Most of haplotype 1 (99.64%) is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.01 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces genomes for eukaryotic species found in Britain and Ireland.

Bluebell moth↗

PubMed2026

The genome sequence of the Orange Underwing, Archiearis parthenias (Linnaeus, 1761) (Lepidoptera: Geometridae).

We present a genome assembly from an individual female Archiearis parthenias (Orange Underwing; Arthropoda; Insecta; Lepidoptera; Geometridae). The assembly contains two haplotypes with total lengths of 528.46 megabases and 426.17 megabases. Most of haplotype 1 (99.61%) is scaffolded into 26 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.24 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Archiearis parthenias↗

PubMed2026

The genome sequence of an ichneumonid wasp, Venturia canescens (Gravenhorst, 1829) (Hymenoptera: Ichneumonidae).

We present a genome assembly from an individual female Venturia canescens (ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence has a total length of 299.96 megabases. Most of the assembly (97.25%) is scaffolded into 11 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 27.35 kilobases. Gene annotation of this assembly on Ensembl identified 14 281 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Hymenoptera↗

PubMed2026

The genome sequence of a window fly, Scenopinus jerei Pohjoismäki & Haarto, 2021 (Diptera: Scenopinidae).

We present a genome assembly from an individual male Scenopinus jerei (window fly; Arthropoda; Insecta; Diptera; Scenopinidae). The assembly contains two haplotypes with total lengths of 345.25 megabases and 232.44 megabases. Most of haplotype 1 (94.85%) is scaffolded into 5 chromosomal pseudomolecules, including the X and Y sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.52 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Scenopinus jerei; window fly; genome sequence; chr↗

PubMed2026

The genome sequence of the Golden Plusia, Polychrysia moneta (Fabricius, 1787) (Lepidoptera: Noctuidae).

We present a genome assembly from a male specimen of Polychrysia moneta (Golden Plusia; Arthropoda; Insecta; Lepidoptera; Noctuidae). The assembly contains two haplotypes with total lengths of 430.64 megabases and 425.60 megabases. Most of haplotype 1 (98.46%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.26 kilobases. This work is part of Project Psyche, a collaborative programme generating genomes for European butterflies and moths.

Polychrysia moneta; Golden Plusia; genome sequence↗

PubMed2025

The genome sequence of an ichneumonid wasp, Netelia melanura (Thomson, 1888) (Hymenoptera: Ichneumonidae).

We present a genome assembly from an individual male Netelia melanura (ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence has a total length of 253.87 megabases. Most of the assembly (94.81%) is scaffolded into 7 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 28.04 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Netelia melanura; ichneumonid wasp; genome sequenc↗

PubMed2025

The genome sequence of the bronze furrow bee, Seladonia tumulorum (Linnaeus, 1758).

We present the haploid genome assembly of an individual male Seladonia tumulorum (the bronze furrow bee; Arthropoda; Insecta; Hymenoptera; Halictidae). The genome sequence is 479 megabases in span. Most of the assembly (84.28%) is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 17.3 kilobases in length. Gene annotation of this assembly on Ensembl identified 19,308 protein-coding genes. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Hymenoptera↗