Biomedical subjects

Tree of Life Core Informatics collective

Publications and source records attributed to Tree of Life Core Informatics collective.

At least 73 records · Page 4Linked to original sources

PubMed2025

The genome sequence of the Treble Lines, Charanyca trigrammica (Hufnagel, 1766) (Lepidoptera: Noctuidae).

We present a genome assembly from an individual male Charanyca trigrammica (Treble Lines; Arthropoda; Insecta; Lepidoptera; Noctuidae). The assembly contains two haplotypes with total lengths of 546.43 megabases and 546.58 megabases. Most of haplotype 1 (99.97%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.44 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Charanyca trigrammica; Treble Lines; genome sequen↗

PubMed2025

The genome sequence of the Eurasian Spoonbill, Platalea leucorodia Linnaeus, 1758 (Pelecaniformes: Threskiornithidae).

We present a genome assembly from an individual female Platalea leucorodia (Eurasian Spoonbill; Chordata; Aves; Pelecaniformes; Threskiornithidae). The assembly contains two haplotypes with total lengths of 1 345.83 megabases and 1 190.44 megabases. Most of haplotype 1 (95.57%) is scaffolded into 37 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 17.15 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Platalea leucorodia; Eurasian Spoonbill; genome se↗

PubMed2025

The genome sequence of the Yellow-barred Brindle, Acasis viretata (Hübner, 1799) (Lepidoptera: Geometridae).

We present a genome assembly from an individual female Acasis viretata (Yellow-barred Brindle; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence has a total length of 297.68 megabases. Most of the assembly (99.98%) is scaffolded into 17 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled, with a length of 16.01 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Acasis viretata; Yellow-barred Brindle; genome seq↗

PubMed2025

The genome sequence of the comb-clawed beetle, Prionychus ater (Fabricius, 1775) (Coleoptera: Tenebrionidae).

We present a genome assembly from an individual male Prionychus ater (comb-clawed beetle; Arthropoda; Insecta; Coleoptera; Tenebrionidae). The assembly contains two haplotypes with total lengths of 385.22 megabases and 347.54 megabases. Most of haplotype 1 (97.6%) is scaffolded into 14 chromosomal pseudomolecules, including the X sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.26 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland.

Prionychus ater; comb-clawed beetle; genome sequen↗

PubMed2025

The genome sequence of the Tyrrhenian Wall Lizard, Podarcis tiliguerta (Gmelin, 1789) (Squamata: Lacertidae).

We present a genome assembly from an individual female Podarcis tiliguerta (Tyrrhenian Wall Lizard; Chordata; Lepidosauria; Squamata; Lacertidae). The assembly contains two haplotypes with total lengths of 1 462.31 megabases and 1 394.94 megabases. Most of haplotype 1 (99.26%) is scaffolded into 20 chromosomal pseudomolecules, including the W and Z sex chromosomes. Most of haplotype 2 (99.2%) is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 17.19 kilobases.

Podarcis tiliguerta; Tyrrhenian Wall Lizard; genom↗

PubMed2025

The genome sequence of the Orange Beauty, Commophila aeneana (Hübner, 1799-1800) (Lepidoptera: Tortricidae).

We present a genome assembly from a female Commophila aeneana (Orange Beauty; Arthropoda; Insecta; Lepidoptera; Tortricidae). The assembly consists of two haplotypes with total lengths of 429.47 megabases and 322.66 megabases. Most of haplotype 1 (99.82%) is scaffolded into 25 chromosomal pseudomolecules, including the W and Z sex chromosomes., and most of haplotype 2 (99.71%) is scaffolded into 23 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 16.5 kilobases.

Commophila aeneana; Orange Beauty; Orange Conch; g↗

PubMed2025

The genome sequence of the Large Wall Brown, Lasiommata maera (Linnaeus, 1758) (Lepidoptera: Nymphalidae).

We present a genome assembly from a female specimen of Lasiommata maera (Large Wall Brown; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 480.89 megabases and 424.47 megabases. Most of haplotype 1 (99.88%) is scaffolded into 29 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.77 kilobases.

Large Wall Brown↗

PubMed2025

The genome sequence of the Dusky Grizzled Skipper, Pyrgus cacaliae (Rambur, 1839) (Lepidoptera: Hesperiidae).

We present a genome assembly from a female specimen of Pyrgus cacaliae (Dusky Grizzled Skipper; Arthropoda; Insecta; Lepidoptera; Hesperiidae). The assembly contains two haplotypes with total lengths of 808.81 megabases and 696.79 megabases. Most of haplotype 1 (94.63%) is scaffolded into 31 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.43 kilobases.

Dusky Grizzled Skipper↗

PubMed2025

The genome sequence of the Camberwell Beauty, Nymphalis antiopa (Linnaeus, 1758) (Lepidoptera: Nymphalidae).

We present a genome assembly from a male specimen of Nymphalis antiopa (Camberwell Beauty; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 392.57 megabases and 391.53 megabases. Most of haplotype 1 (99.42%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.26 kilobases.

Camberwell Beauty↗

PubMed2025

The genome sequence of the de Prunner's Ringlet, Erebia triaria von Prunner, 1798 (Lepidoptera: Nymphalidae).

We present a genome assembly from a female specimen of Erebia triaria (de Prunner's Ringlet; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 521.30 megabases and 412.03 megabases. Most of haplotype 1 (99.7%) is scaffolded into 17 chromosomal pseudomolecules, including the Z 1, Z 2, and W sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.26 kilobases.

Erebia triaria↗

PubMed2025

The genome sequence of the Common Marble, Celypha lacunana (Denis & Schiffermüller, 1775) (Lepidoptera: Tortricidae).

We present a genome assembly from a male specimen of Celypha lacunana (Common Marble; Arthropoda; Insecta; Lepidoptera; Tortricidae). The genome sequence has a total length of 591.83 megabases. Most of the assembly (99.68%) is scaffolded into 27 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 17.21 kilobases.

Celypha lacunana↗

PubMed2025

The genome sequence of the Garden Tiger, Arctia caja (Linnaeus, 1758) (Lepidoptera: Erebidae).

We present a genome assembly from a male specimen of Arctia caja (Garden Tiger; Arthropoda; Insecta; Lepidoptera; Erebidae). The assembly contains two haplotypes with total lengths of 700.59 megabases and 699.20 megabases. Most of haplotype 1 (99.63%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.41 kilobases.

Arctia caja↗

PubMed2025

The genome sequence of the Titania's Fritillary, Boloria titania (Esper, 1793) (Lepidoptera: Nymphalidae).

We present a genome assembly from a female specimen of Boloria titania (Titania's Fritillary; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 496.64 megabases and 454.08 megabases. Most of haplotype 1 (97.13%) is scaffolded into 32 chromosomal pseudomolecules, including the W and Z sex chromosomes. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.17 kilobases.

Boloria titania↗

PubMed2025

The genome sequence of the White-barred Clearwing, Synanthedon spheciformis (Denis & Schiffermüller), 1775 (Lepidoptera: Sesiidae).

We present a genome assembly from a female specimen of Synanthedon spheciformis (White-barred Clearwing; Arthropoda; Insecta; Lepidoptera; Sesiidae). The assembly contains two haplotypes with total lengths of 388.57 megabases and 372.40 megabases. Most of haplotype 1 (99.88%) is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 19.11 kilobases.

Keywords: Synanthedon spheciformis↗

PubMed2025

The genome sequence of the Pearly Heath, Coenonympha arcania Linnaeus, 1761 (Lepidoptera: Nymphalidae).

We present a genome assembly from a female specimen of Coenonympha arcania (Pearly Heath; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The assembly contains two haplotypes with total lengths of 480.99 megabases and 458.33 megabases. Most of haplotype 1 (99.95%) is scaffolded into 29 chromosomal pseudomolecules, including the Z sex chromosome. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 15.28 kilobases.

Coenonympha arcania↗

PubMed2025

The genome sequence of a flea beetle, Altica lythri Aubé, 1843.

We present a genome assembly from a female specimen of Altica lythri (flea beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). This was a triploid specimen and one subgenome was assembled. The genome sequence has a total length of 1,003.51 megabases. Most of the assembly (82.29%) is scaffolded into 12 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled, with a length of 18.39 kilobases. Gene annotation of this assembly on Ensembl identified 18,969 protein-coding genes.

Altica lythri↗

PubMed2025

The genome sequence of the solitary wasp, Cerceris ruficornis (Fabricius, 1793).

We present a genome assembly from a female specimen of Cerceris ruficornis (solitary wasp; Arthropoda; Insecta; Hymenoptera; Crabronidae). The genome sequence has a total length of 566.08 megabases, of which 65.35% is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 18.07 kilobases. Gene annotation of this assembly on Ensembl identified 11,093 protein-coding genes.

Cerceris ruficornis↗

PubMed2025

The genome sequence of the Common Sheetweb Spider Linyphia triangularis (Clerck, 1757).

We present a genome assembly from a male Linyphia triangularis (Common Sheetweb Spider Arthropoda; Arachnida; Araneae; Linyphiidae). The genome sequence has a total length of 1,349.10 megabases. Most of the assembly (95.36%) is scaffolded into 13 chromosomal pseudomolecules, including the X 1 and X 2 sex chromosomes. The mitochondrial genome has also been assembled and is 15.31 kilobases in length.

Araneae↗