Excerpts from the United States Renal Data System 2006 Annual Data Report.
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Adult↗
Biomedical subjects
Yang Qiu
Publications and source records attributed to Yang Qiu.
Cancer: A medical emergency.
Over the last decade clinical trials have established the effectiveness of adjuvant chemotherapy in eradicating micrometastases in many different cancers, including breast, colon, and lung. This success stands in sharp contrast to our failure to cure clinically evident metastatic cancer. These dramatic polarities illustrate the critical importance of treatment timing if residual cancer is to be eradicated. Adjuvant chemotherapy is started only after recovery from surgery, a period of time that can exceed 30 days. During this time any cancer that remains after surgery will continue to divide. Although adjuvant chemotherapy has proven effective despite this time delay, there are reasons, both conceptual and quantitative, to think that its effectiveness could be magnified by a more prompt administration. The extent of this magnification is mathematically modeled in this paper. Surgery and the process of wound healing after surgery create a very favorable environment for the growth of the metastatic clone. Surgery can increase the number of circulating tumor cells and induce an immunosuppressive effect that might facilitate metastatic spread. And the process of wound healing can stimulate growth factors that have been shown to accelerate tumor cell growth. This situation is a double-edged sword. Although the metastatic clone should proliferate rapidly during this time, it should also, at least theoretically, be more sensitive to the effects of chemotherapy as more cells are pushed into a cycling phase. We derive a mathematical model based upon empirical data predicting that the effectiveness of a given chemotherapeutic regimen is inversely proportional to the tumor burden that has to be eradicated, which, in turn, is a function of when chemotherapy is started after surgery. Although the critical importance of timing in the treatment of cancer is intuitive, this knowledge has not yet been fully translated into the clinical practice of medical oncology. If the model presented is accurate, many people are dying unnecessarily of their cancer today because we are waiting too long after surgery to use highly effective chemotherapies, following well-trod clinical paths and established paradigms for how cancer should be treated.
Antineoplastic Agents↗
Carbaryl inhibits basal and FSH-induced progesterone biosynthesis of primary human granulosa-lutein cells.
Carbaryl is known to impede female reproductive function, however, the mechanisms through which the adverse effects are mediated are not clearly elucidated. In order to get insight into the mechanisms, this study was conducted to raise fresh concerns about the potential effects of carbaryl on steroidogenesis by primary human granulosa-lutein cells (hGLCs) and explore the possible nature of this action. hGLCs were co-incubated with various concentrations of carbaryl at 0, 1, 5, 25, 125 micromol/L for 24 h to examine effects of this carbamate pesticide on progesterone accumulation. We observed that the carbaryl inhibited basal and FSH-induced progesterone production in a dose-dependent manner. We also investigated the effects of carbaryl on 22(R)-hydroxycholesterol (22R-HC)-stimulated progesterone yield, basal and FSH-stimulated StAR gene expression and cyclic adenosine monophosphate (cAMP) production, as well as forskolin (non-specific activator of adenylyl cyclase)-induced progesterone and cAMP production of hGLCs. We found that the decreased progesterone biosynthesis was accompanied with a reduced cAMP abundance on both basal and FSH-induced condition. Furthermore, our results demonstrated that the 22R-HC could remove the carbaryl-induced restraint of progesterone biosynthesis, suggesting that carbaryl caused a disruption of cholesterol transport across mitochondrial membranes, which was further confirmed by the observation that carbaryl inhibited the gene expression of steroidogenic acute regulatory protein (StAR). In addition, the inhibitory effects of carbaryl on progesterone and cAMP production were completely reversed by addition of forskolin to the cell culture, which indicated a repaired site on the upstream components of adenylate cyclase or adenylate cyclase per se by carbaryl in the cAMP-mediated signal pathway. All the effects mentioned above were not due to a detrimental action of carbaryl on cell viability by MTS assay. In conclusion, carbaryl may inhibit steroidogenesis, at least in part, by obstructing the delivery of cholesterol over mitochondrial membranes and attenuating cAMP generation.
Carbaryl↗
The crystal structure of Aq_328 from the hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold.
The structure of Aq_328, an uncharacterized protein from hyperthermophilic bacteria Aquifex aeolicus, has been determined to 1.9 A by using multi-wavelength anomalous diffraction (MAD) phasing. Although the amino acid sequence analysis shows that Aq_328 has no significant similarity to proteins with a known structure and function, the structure comparison by using the Dali server reveals that it: (1) assumes a histone-like fold, and (2) is similar to an ancestral nuclear histone protein (PDB code 1F1E) with z-score 8.1 and RMSD 3.6 A over 124 residues. A sedimentation equilibrium experiment indicates that Aq_328 is a monomer in solution, with an average sedimentation coefficient of 2.4 and an apparent molecular weight of about 20 kDa. The overall architecture of Aq_328 consists of two noncanonical histone domains in tandem repeat within a single chain, and is similar to eukaryotic heterodimer (H2A/H2B and H3/H4) and an archaeal histone heterodimer (HMfA/HMfB). The sequence comparisons between the two histone domains of Aq_328 and six eukaryotic/archaeal histones demonstrate that most of the conserved residues that underlie the Aq_328 architecture are used to build and stabilize the two cross-shaped antiparallel histone domains. The high percentage of salt bridges in the structure could be a factor in the protein's thermostability. The structural similarities to other histone-like proteins, molecular properties, and potential function of Aq_328 are discussed in this paper.
Bacteria↗
Standardizing global gene expression analysis between laboratories and across platforms.
To facilitate collaborative research efforts between multi-investigator teams using DNA microarrays, we identified sources of error and data variability between laboratories and across microarray platforms, and methods to accommodate this variability. RNA expression data were generated in seven laboratories, which compared two standard RNA samples using 12 microarray platforms. At least two standard microarray types (one spotted, one commercial) were used by all laboratories. Reproducibility for most platforms within any laboratory was typically good, but reproducibility between platforms and across laboratories was generally poor. Reproducibility between laboratories increased markedly when standardized protocols were implemented for RNA labeling, hybridization, microarray processing, data acquisition and data normalization. Reproducibility was highest when analysis was based on biological themes defined by enriched Gene Ontology (GO) categories. These findings indicate that microarray results can be comparable across multiple laboratories, especially when a common platform and set of procedures are used.
Gene Expression Profiling↗
The mitochondrial sequences of Heptathela hangzhouensis and Ornithoctonus huwena reveal unique gene arrangements and atypical tRNAs.
We have sequenced the complete mitochondrial genomes of the spiders Heptathela hangzhouensis and Ornithoctonus huwena. Both genomes encode 13 protein-coding genes, 22 tRNA genes, and 2 ribosomal RNA genes. H. hangzhouensis, a species of the suborder Mesothelae and a representative of the most basal clade of Araneae, possesses a gene order identical to that of Limulus polyphemus of Xiphosura. On the other hand, O. huwena, a representative of suborder Opisthothelae, infraorder Mygalomorphae, was found to have seven tRNA genes positioned differently from those of Limulus. The rrnL-trnL1-nad1 arrangement shared by the araneomorph families Salticidae, Nesticidae, and Linyphiidae and the mygalomorph family Theraphosidae is a putative synapomorphy joining the mygalomorph with the araneomorph. Between the two species examined, base compositions also differ significantly. The lengths of most protein-coding genes in H. hangzhouensis and O. huwena mtDNA are either identical to or slightly shorter than their Limulus counterparts. Usage of initiation and termination codons in these protein-coding genes seems to follow patterns conserved among most arthropod and some other metazoan mitochondrial genomes. The sequences of the 3' ends of rrnS and rrnL in the two species are similar to those reported for Limulus, and the entire genes are shortened by about 100-250 nucleotides with respect to Limulus. The lengths of most tRNA genes from the two species are distinctly shorter than those of Limulus and the sequences reveal unusual inferred tRNA secondary structures. Our finding provides new molecular evidence supporting that the suborder Mesothelae is basal to opisthothelids.
Animals↗
[Effects of carbaryl on serum steroid hormone and the function of antioxidant system in female rats].
OBJECTIVE: To investigate the effects of carbaryl on serum steroid hormone and function of antioxidant system in female Sprague Dawley rats. METHODS: Carbaryl was administrated to the adult female rats at doses of 0, 1.028, 5.140 and 25.704 mg x kg(-1) x d(-1) for 30 d. Vaginal smears of rats were taken to determine estrous cycle. Serum 17beta-estradiol (E(2)) and progesterone (P(4)) concentrations were measured by radioimmunoassay. The activities of superoxide dismutase (SOD) and glutathione-s-transferase (GST), and the levels of malondialdehyde (MDA) and glutathione (GSH) were measured by spectrophotometry. RESULTS: The number of estrous cycle in exposed groups were obviously lower than in control group (P < 0.05, P < 0.01). Body weight gain in high dose group (25.704 mg x kg(-1) x d(-1)) was significantly lower than that in control. Meanwhile, the organ coefficient of ovary and uterus declined in a dose-dependent manner. Serum E(2) level [(19.93 +/- 2.21) nmol/L] in 25.704 mg group was lower than in control group [(28.76 +/- 6.12) nmol/L, P < 0.05], and P(4) level (1.21 +/- 0.40) nmol/L in 1.028 mg group was higher than that in control group [(0.63 +/- 0.39) nmol/L, P < 0.05]. The activity of SOD first reduced then rose in ovary, and first rose then reduced in serum. The contents of MDA increased in ovary, while decreased in the serum. GSH contents and GST activity increased in ovary, while in serum GSH contents decreased and GST activity first increased then decreased. CONCLUSION: Carbaryl could disrupt estrous cycle and affect serum steroid hormone, and the function of antioxidant system in female SD rats.
Animals↗
Phylogenetic placement of the spider genus Nephila (Araneae: Araneoidea) inferred from rRNA and MaSp1 gene sequences.
The family status of the genus Nephila, which belongs to Tetragnathidae currently but Araneidae formerly, was reexamined based on molecular phylogenetic analyses. In the present study, 12S and 18S rRNA gene fragments of eight species of spiders were amplified and sequenced. In addition, 3'-end partial cDNA of major ampullate spidroin-1 (MaSp1) gene of Argiope amoena was cloned and sequenced, and the 3'-end non-repetitive region's cDNA sequence of MaSp1 gene and the predicted amino acid sequence of C-terminal non-repetitive region of MaSp1 were aligned with some previously known sequences. The resulting phylogeny showed that Araneidae and Tetragnathidae are not a sister group in the superfamily Araneoidea, and the genus Nephila is closer to the genera of the family Araneidae rather than to those of Tetragnathidae. We suggest that the genus Nephila should be transferred back to Araneidae. Or the subfamily Nephilinae might be elevated to family level after it was redefined and redelimited. Furthermore, the study showed that 3'-end non-repetitive region's cDNA sequence of MaSp1 gene and C-terminal non-repetitive region's amino acid sequence of MaSp1 are useful molecular markers for phylogenetic analysis of spiders.
Amino Acid Sequence↗
[Numerical analysis on ecological gradient of plant communities in Donggou catchment, Hebei Province, China].
Based on DCCA-OAC, the plant communities in Donggou catchment, Bashang region, Hebei Province, were classified into 8 types of community. The environmental gradient, structural gradient and human-disturbance could be well expressed in the ordination plot. Axis 1 reflected the spatial pattern of plant communities along the gradient of altitude and slope, while axis 2 showed the plant community distribution on different aspects. The plant communities showed a distribution gradient along moisture gradient as shown by the combination of both axes of DCCA. The communities exhibited different trends in the synusia and species composition. Betula platyphylla was only existed on the high and steep northern aspect. The dominate species of shrub and herbaceous synusia on northern aspect were Potentilla fruticosa and Carex rigescens respectively, while on southern aspect were Artemisia spp. and Agropyron cristatum. The distribution along altitude and slope also existed among dominate species of each synusia on southern aspect. In addition, human disturbance, including grazing, farming and logging, had significant influence on the temporal and spatial distribution of communities. In general, the better the habitat, the more intensive the human disturbance.
Betula↗
The auxin-induced transcriptome for etiolated Arabidopsis seedlings using a structure/function approach.
To increase our understanding of the mode of action of auxin, we analyzed auxin-induced changes in the Arabidopsis transcriptome with microarrays representing 20426 Arabidopsis genes. Treatment of etiolated seedlings with low concentrations of the auxin, indole-3-acetic acid (IAA), decreased the expression levels of 23 genes, whereas it increased the expression levels of 47 genes within 20 min. After 40 min, the directional trend in genomic change was predominantly an increase in gene expression. Among the most rapidly induced changes are those in genes encoding transcription factors. Promoter regions of transiently induced genes contained DNA motifs that bind auxin response (ARFAT) and silence element binding factors whereas genes induced by IAA during the entire experimental period contained MYC and ARFAT DNA motifs at higher frequencies. Six structurally diverse auxins were analyzed to determine genes that are unique to a specific auxin, as well as a common set of genes that are rapidly regulated by all tested auxins, thus enabling the identification of shared DNA motifs. In addition to ARFAT, analysis of promoter regions of genes induced by all six auxins revealed the presence of an abscisic-acid-responsive DC3 promoter-binding factor and low temperature responsive elements suggesting a possible role for abscisic acid in modulating auxin-induced responses.
5' Untranslated Regions↗
The effects of land use and its patterns on soil properties in a small catchment of the Loess Plateau.
Due to relatively strong human activities in the hilly area of Loess Plateau, the natural vegetation has been destroyed, and landscape pattern based on agricultural land matrix was land use mosaic composing of shrub land, grassland, woodland and orchard. This pattern has an important effect on soil moisture and soil nutrients. The Danangou catchment, a typical small catchment, was selected to study the effects of land use and its patterns on soil moisture and nutrients in this paper. The results are as follows: The comparisons of soil moisture among seven land uses for wet year and dry year were performed; (1) the average of soil moisture content for whole catchment was 12.11% in wet year, while it was 9.37% in dry year; (2) soil moisture among seven land uses significantly different in dry year, but not in wet year; (3) from wet year to dry year, the profile type of soil moisture changed from decreasing type to fluctuation-type and from fluctuant type to increasing type; (4) the increasing trend in soil moisture from the top to foot of hillslope occurred in simple land use along slope, while complicated distribution of soil moisture was observed in multiple land uses along slope. The relationship between soil nutrients and land uses and landscape positions were analysed: (1) five nutrient contents of soil organic matter (SOM), total N (TN), available N (AN), total P (TP) and available P (AP) in hilly area were lower than that in other area. SOM content was less than 1%, TN content less than 0.07%, and TP content between 0.05% and 0.06%; (2) SOM and TN contents in woodland, shrub land and grassland were significantly higher than that in fallow land and cropland, and higher level in soil fertility was found in crop-fruit intercropping land among croplands; (3) soil nutrient distribution and responses to landscape positions were variable depending on slope and the location of land use types.
China↗