A new method for protein domain recognition.

Z Y Xuan; L J Ling; R S Chen

doi:10.1007/s002490050246

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A new method for protein domain recognition.

Z Y Xuan·L J Ling·R S Chen

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Abstract

A fuzzy cluster method is presented to recognize protein domains. This algorithm can identify domains globally. A protein structure set was used to test the algorithm. Among 219 proteins, 66.7% yielded results that agreed with the reference definitions, 30.6% showed minor differences, and only 2.7% (six proteins) showed major differences with the reference. The new method is more than 20 times fast than previous algorithms.

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Cluster Analysis Contractile Proteins Lectins Models, Molecular Models, Theoretical Protein Conformation Protein Structure, Secondary Proteins Journal Article Research Support, Non-U.S. Gov't

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Z Y Xuan, L J Ling, R S Chen. 2000. A new method for protein domain recognition.. https://doi.org/10.1007/s002490050246

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