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DiffTool: building, visualizing and querying protein clusters.

Farid Chetouani·Philippe Glaser·Frank Kunst
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Abstract

UNLABELLED: DiffTool is a resource to build and visualize protein clusters computed from a sequence database. The package provides a clustering tool to construct protein families according to sequence similarities and a web interface to query the corresponding clusters. A subtractive genome analysis tool selects protein families specific for a genome or a group of genomes. For each protein cluster, DiffTool includes access to sequences, coloured multiple alignments and phylogenetic trees. AVAILABILITY: A cluster database built from yeast and complete prokaryotic genomes is queryable at http://bioweb.pasteur.fr/seqanal/difftool. All the Perl sources are freely available to non-profit organizations upon request.

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Cluster AnalysisComputer GraphicsDatabase Management SystemsDatabases, ProteinGenomeInformation Storage and RetrievalInternetSequence AlignmentSequence Analysis, ProteinSequence HomologySoftwareJournal Article

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Farid Chetouani, Philippe Glaser, Frank Kunst. 2002. DiffTool: building, visualizing and querying protein clusters.. https://doi.org/10.1093/bioinformatics%2F18.8.1143

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