Genquire: genome annotation browser/editor.

M D Wilkinson; D Block; W L Crosby

doi:10.1093/bioinformatics/18.10.1398

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Genquire: genome annotation browser/editor.

M D Wilkinson·D Block·W L Crosby

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Abstract

UNLABELLED: We present a software package, Genquire, that allows visualization, querying, hand editing, and de novo markup of complete or partially annotated genomes. The system is written in Perl/Tk and uses, where possible, existing BioPerl data models and methods for representation and manipulation of the sequence and annotation objects. An adaptor API is provided to allow Genquire to display a wide range of databases and flat files, and a plugins API provides an interface to other sequence analysis software. AVAILABILITY: Genquire v3.03 is open-source software. The code is available for download and/or contribution at http://www.bioinformatics.org/Genquire

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Chromosome Mapping Contig Mapping Database Management Systems Databases, Nucleic Acid Documentation Hypermedia Information Storage and Retrieval Sequence Alignment Sequence Analysis, DNA Software User-Computer Interface Word Processing Journal Article Research Support, Non-U.S. Gov't

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M D Wilkinson, D Block, W L Crosby. 2002. Genquire: genome annotation browser/editor.. https://doi.org/10.1093/bioinformatics%2F18.10.1398

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