AntiHunter: searching BLAST output for EST antisense transcripts.

Giovanni Lavorgna; Luca Sessa; Alessandro Guffanti; Lelio Lassandro; Giorgio Casari

doi:10.1093/bioinformatics/btg460

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AntiHunter: searching BLAST output for EST antisense transcripts.

Giovanni Lavorgna·Luca Sessa·Alessandro Guffanti·Lelio Lassandro·Giorgio Casari

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Abstract

AntiHunter is a new web-based tool for the identification of expressed sequence tag (EST) antisense transcripts from BLAST output. In order to perform an analysis, user is required to input a genomic sequence plus an associated list of transcript names and coordinates of the genomic region (i.e. genome annotation). After masking the repeated regions (if any), program will perform a BLASTN search of the input sequence versus the selected EST database, reporting by Email the EST entries that reveal a putative antisense transcript with respect to the user supplied list.

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Algorithms DNA, Antisense Expressed Sequence Tags Hypermedia Information Storage and Retrieval Internet Reproducibility of Results Sensitivity and Specificity Sequence Alignment Sequence Analysis, DNA Software Transcription, Genetic Comparative Study Evaluation Study Journal Article Research Support, Non-U.S. Gov't Validation Study

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Giovanni Lavorgna, Luca Sessa, Alessandro Guffanti, Lelio Lassandro, Giorgio Casari. 2004-01-22. AntiHunter: searching BLAST output for EST antisense transcripts.. https://doi.org/10.1093/bioinformatics%2Fbtg460

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