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PubMed · 15180930

Java Treeview--extensible visualization of microarray data.

Alok J Saldanha
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Abstract

Open source software encourages innovation by allowing users to extend the functionality of existing applications. Treeview is a popular application for the visualization of microarray data, but is closed-source and platform-specific, which limits both its current utility and suitability as a platform for further development. Java Treeview is an open-source, cross-platform rewrite that handles very large datasets well, and supports extensions to the file format that allow the results of additional analysis to be visualized and compared. The combination of a general file format and open source makes Java Treeview an attractive choice for solving a class of visualization problems. An applet version is also available that can be used on any website with no special server-side setup.

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ColorComputer GraphicsDatabases, BibliographicGene Expression ProfilingInformation Storage and RetrievalInternetOligonucleotide Array Sequence AnalysisProgramming LanguagesSequence Analysis, DNASoftwareUser-Computer InterfaceJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.Research Support, U.S. Gov't, P.H.S.

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Alok J Saldanha. 2004-06-04. Java Treeview--extensible visualization of microarray data.. https://doi.org/10.1093/bioinformatics%2Fbth349

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