Meta-DP: domain prediction meta-server.

Harpreet Kaur Saini; Daniel Fischer

doi:10.1093/bioinformatics/bti445

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Meta-DP: domain prediction meta-server.

Harpreet Kaur Saini·Daniel Fischer

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Abstract

UNLABELLED: Meta-DP, a domain prediction meta-server provides a simple interface to predict domains in a given protein sequence using a number of domain prediction methods. The Meta-DP is a convenient resource because through accessing a single site, users automatically obtain the results of the various domain prediction methods along with a consensus prediction. The Meta-DP is currently coupled to 10 domain prediction servers and can be extended to include any number of methods. Meta-DP can thus become a centralized repository of available methods. Meta-DP was also used to evaluate the performance of 13 domain prediction methods in the context of CAFASP-DP. AVAILABILITY: The Meta-DP server is freely available at http://meta-dp.bioinformatics.buffalo.edu and the CAFASP-DP evaluation results are available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html CONTACT: hkaur@bioinformatics.buffalo.edu SUPPLEMENTARY INFORMATION: Available at http://cafasp4.bioinformatics.buffalo.edu/dp/update.html.

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Algorithms Computer Graphics Computer Simulation Internet Models, Molecular Protein Conformation Protein Structure, Tertiary Proteins Sequence Alignment Sequence Analysis, Protein Sequence Homology, Amino Acid Software Systems Integration User-Computer Interface Evaluation Study Journal Article Research Support, Non-U.S. Gov't

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Harpreet Kaur Saini, Daniel Fischer. 2005-04-19. Meta-DP: domain prediction meta-server.. https://doi.org/10.1093/bioinformatics%2Fbti445

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