A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases.

J M Claverie

doi:10.1093/nar/12.1part1.397

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A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases.

J M Claverie

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Abstract

I present a common philosophy for implementing the EMBL and GENBANK (BBN-Los Alamos) nucleic acid sequence databases, as well as the National Biological Foundation (Dayhoff) protein sequence database. The associated FORTRAN 77 fully transportable software package includes: 1) modules for implementing each of these databases from the initial magnetic tape file, 2) modules performing a fast mnemonic access, 3) modules performing key-string access and allowing the definition of user-specific database subsets, 4) a common probe searching module allowing the stacking of multiple combined search requests over the databases. This software is particularly suitable for 32-bit mini/microcomputers but would eventually run on 16-bit computers.

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Amino Acid Sequence Base Sequence Computers Information Systems Software Journal Article Research Support, Non-U.S. Gov't

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J M Claverie. 1984-01-11. A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases.. https://doi.org/10.1093/nar%2F12.1part1.397

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