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Biomimetic selectivity.

Synthetic organic chemistry normally achieves selectivity by manipulation of the intrinsic reactivity of the substrate, but enzyme use is quite a different principle. The geometry of the enzyme-substrate complex determines enzymatic selectivity, completely overwhelming any normal selective reactivities. Biomimetic chemistry aims to imitate the enzymatic style. Some early approaches used attached reagents or templates to direct photochemical and free radical processes, with a combination of geometric and reactivity control. Recent work uses a mimic of the enzyme class cytochrome P-450 to achieve the selective hydroxylations of steroids with complete domination by the geometry of the catalyst-substrate complex.

Catalytic Domain↗

Effects of riboflavin photoproducts on microbial activity during photosensitization of atrazine transformation.

The contributions and effects of photolysis and microbial assemblages to 37.6 mg/L riboflavin-sensitized atrazine transformation were studied along with the toxicity of the intermediate mixtures. High-performance liquid chromatography analysis revealed that riboflavin significantly enhanced the phototransformation of atrazine (10 mg/L) by reducing the parent compound concentration to less than 20% in 72 h. However, radiotracer measurements indicated atrazine was not mineralized to the same degree after 3 days of exposure. We hypothesize that riboflavin-sensitized transformation of atrazine is primarily photochemical; however, the biological component seems to promote overall atrazine degradation under solar irradiation. Based on the results of spread plate counting or 14C-glucose mineralization measurement, at a test concentration of 12.1 mg/L, lumichrome (a major riboflavin photoproduct) was found to be nontoxic to the test microbial assemblages in a reservoir water sample. Other riboflavin photoproducts and/or certain chemically reactive species were speculated to cause a cytotoxic effect. Overall, our data indicate that riboflavin may be an economical photosensitizing agent for atrazine degradation, but the apparent photoinduced cytotoxicity observed during transformation is of concern to the microbial assemblages that are needed for complete remediation. Further investigation into why the biotic component enhances riboflavin phototransformation of atrazine and the time frame of microbial recovery from riboflavin inhibition is needed. Such work may lead to cost-effective surface water treatment systems involving combined photochemical and microbial degradation processes.

Atrazine↗

In vivo temperature dependence of cyclic and pseudocyclic electron transport in barley.

The effect of temperature on the rate of electron transfer through photosystems I and II (PSI and PSII) was investigated in leaves of barley (Hordeum vulgare L.). Measurements of PSI and PSII photochemistry were made in 21% O2 and in 2% O2, to limit electron transport to O2 in the Mehler reaction. Measurements were made in the presence of saturating CO2 concentrations to suppress photorespiration. It was observed that the O2 dependency of PSII electron transport is highly temperature dependent. At 10 degrees C, the quantum yield of PSII (phi PSII) was insensitive to O2 concentration, indicating that there was no Mehler reaction operating. At high temperatures (> 25 degrees C) a substantial reduction in phi PSII was observed when the O2 concentration was reduced. However, under the same conditions, there was no effect of O2 concentration on the delta pH-dependent process of non-photochemical quenching. The rate of electron transport through PSI was also found to be independent of O2 concentration across the temperature range. We conclude that the Mehler reaction is not important in maintaining a thylakoid proton gradient that is capable of controlling PSII activity, and present evidence that cyclic electron transport around PSI acts to maintain membrane energisation at low temperature.

Biological Transport, Active↗

Radiologic exposure conditions and resultant skin doses in application of xeroradiography to the orthodontic diagnosis.

Xeroradiography is the recording of radiologic images by a photoelectric process rather than the photochemical one used in conventional radiography. In order to investigate the advantages and disadvantages of xeroradiography in the orthodontic field, minimum xeroradiologic exposure conditions for skull projections, Schüller's and oblique temporomandibular joint projections, and hand projections were established by thirteen examiners and the relationship between the image production and x-ray radiation was discussed in comparison with related findings obtained with conventional film techniques. The advantages of xeroradiograph were finer and clear images caused by the "edge effect" and wide latitude of xeroradiography; the main hazard was the unavoidable larger skin dose required by the projection procedures. The skin doses with xeroradiography were 2.4 to 16.2 times larger than those with conventional film techniques.

Adult↗

Photodamage to the lens in vitro: implications of the Haber-Weiss reaction.

Studies have been conducted to examine the implications of photochemical generation of O2- and its derivatization to H2O2 and OH . in the physiology of the lens in vitro. Physiological status was determined by measuring the uptake of rubidium by the intact tissue when cultured in riboflavin-containing medium, in dark and light, and in the presence and absence of various scavengers. In the presence of light, the uptake of rubidium in the lens was greatly diminished; this suggests photodamage to the tissue. MnSOD and ferricyanide protected against this photochemical damage. The damaging process was thus initiated by the generation of O2-. The tissue damage was also attenuated by catalase, ferrocyanide, and mannitol. These results, therefore, suggest the participation of hydrogen peroxide and the subsequent Haber-Weiss reaction in the photodamaging process.

Animals↗

Prediction of ozone concentration in ambient air using multivariate methods.

Multivariate statistical methods including pattern recognition (Principal Component Analysis--PCA) and modeling (Multiple Linear Regression--MLR, Partial Least Squares--PLS, as well as Principal Component Regression--PCR) methods were carried out to evaluate the state of ambient air in Miskolc (second largest city in Hungary). Samples were taken from near the ground at a place with an extremely heavy traffic. Although PCA is not able to determine the significance of variables, it can uncover their similarities and classify the cases. PCA revealed that it is worth to separate day and night data because different factors influence the ozone concentrations during all day. Ozone concentration was modeled by MLR and PCR with the same efficiency if the conditions of meteorological parameters were not changed (i.e. morning and afternoon). Without night data, PCR and PLS suggest that the main process is not a photochemical but a chemical one.

Air↗

New photocycle intermediates in the photoactive yellow protein from Ectothiorhodospira halophila: picosecond transient absorption spectroscopy.

Previous studies have shown that the room temperature photocycle of the photoactive yellow protein (PYP) from Ectothiorhodospira halophila involves at least two intermediate species: I1, which forms in <10 ns and decays with a 200-micros lifetime to I2, which itself subsequently returns to the ground state with a 140-ms time constant at pH 7 (Genick et al. 1997. Biochemistry. 36:8-14). Picosecond transient absorption spectroscopy has been used here to reveal a photophysical relaxation process (stimulated emission) and photochemical intermediates in the PYP photocycle that have not been reported previously. The first new intermediate (I0) exhibits maximum absorption at approximately 510 nm and appears in </=3 ps after 452 nm excitation (5 ps pulse width) of PYP. Kinetic analysis shows that I0 decays with a 220 +/- 20 ps lifetime, forming another intermediate (Idouble dagger0) that has a similar difference wavelength maximum, but with lower absorptivity. Idouble dagger0 decays with a 3 +/- 0.15 ns time constant to form I1. Stimulated emission from an excited electronic state of PYP is observed both within the 4-6-ps cross-correlation times used in this work, and with a 16-ps delay for all probe wavelengths throughout the 426-525-nm region studied. These transient absorption and emission data provide a more detailed understanding of the mechanistic dynamics occurring during the PYP photocycle.

Biophysical Phenomena↗

Structure around C6-C7 bond of the chromophore in bathorhodopsin: low-temperature spectroscopy of 6s-cis-locked bicyclic rhodopsin analogs.

To elucidate the structural changes near the beta-ionone ring region of the chromophore during the photobleaching process of rhodopsin, the photochemical and subsequent thermal reactions of rhodopsin analogs, whose retinylidene chromophores were fixed in a 6s-cis form with a five-membered ring (6,5-rhodopsin) and a seven-membered ring (6,7-rhodopsin), respectively, were investigated by low-temperature spectroscopy. Like rhodopsin, both the rhodopsin analogs convert to the respective batho-intermediates upon absorption of light at -190 degrees C. The extinction coefficient of batho-intermediate of 6,5-rhodopsin is similar to that of bathorhodopsin, while that of 6,7-rhodopsin is considerably smaller than that of bathorhodopsin. Like bathorhodopsin, the batho-intermediate of 6,5-rhodopsin directly converts to lumi-intermediate, while that of 6,7-rhodopsin first converts to a blue-shifted intermediate and then to lumi-intermediate. These results strongly suggest that the structure around the beta-ionone ring region of the bathorhodopsin chromophore resembles 6,5-retinal rather than 6,7-retinal. From the comparison of the structural features among retinal, 6,5-retinal, and 6,7-retinal, a possible conformation around C6-C7 bond of the bathorhodopsin chromophore is discussed.

Animals↗

Identification of the 1,3,2,4-Dithiadiazolyl RCNSNS(*) Radical Dimers in Solution, Their Dimeric Concerted Photochemically Symmetry-Allowed Rearrangement to 1,2,3,5-Dithiadiazolyl RCNSSN(*) by the Net Exchange of Adjacent Cyclic Sulfur and Nitrogen Atoms, and the Photolysis of RCNSNS(*).

The 1,3,2,4-dithiadiazolyl RCNSNS(*) radicals undergo an unprecedented concerted rearrangement to the thermodynamically more stable 1,2,3,5-dithiadiazolyl RCNSSN(*) radicals by the net exchange of adjacent cyclic sulfur and nitrogen atoms. The UV-visible spectra of RCNSNS(*) (R = Ph, p-O(2)NC(6)H(4), 3,5-(O(2)N)(2)C(6)H(3), CF(3)) in solution show bands at 250 nm (strong) and 680 nm (very weak) attributable to monomer and two dimer bands at 376 and 480 nm, the positions of which are independent of the substituents, providing direct identification of the radical dimers in solution. The dimerization equilibrium constant (K(298) approximately 0.7 for R = Ph) at room temperature was derived from the enthalpy and entropy changes for the dimerization of PhCNSNS(*) (DeltaH(d) degrees = -19.0 kJ/mol, DeltaS degrees = -66.5 J/mol) estimated by a variable-temperature ESR spectroscopic study. In addition, RCNSNS(*) (R = Bu(t), Ph) undergo an apparent unimolecular photolysis to RCN and possibly SNS(*) (analogue of ONO(*)). The photochemical rearrangement and dissociation (for R = Ph and 3,5-(O(2)N)(2)C(6)H(3)) were shown to proceed by irradiation of the radical dimer (376 and 480 nm) and monomer (250 nm), respectively. Thus, the radical rearrangement reasonably occurs via a concerted dimeric pathway shown by molecular orbital calculations (CNDO) to be photochemically symmetry-allowed. In addition, we propose that the radical dissociation proceeds via a concerted unimolecular photochemically symmetry-allowed process.

Journal Article↗

Triplet-sensitized photolysis of the photoisomer of a 2,11-diaza[3,3](9,10)anthracenoparacyclophane: an adiabatic cycloreversion and a [2pia + 2pia + 2sigmas] rearrangement in a triplet state of the biplanophane system.

The triplet-sensitized photoreactions of the title biplanophane system 6, the photoisomer of a 2,11-diaza[3,3](9,10)anthracenoparacyclophane derivative 5, were investigated by stationary and laser-flash photolyses using xanthone (XT) and benzophenone (BP) as triplet sensitizers. When photoisomer 6 underwent XT-sensitized irradiation, a triplet cyclophane 5 and a novel polycyclic product 7 were obtained via an adiabatic cycloreversion and a formal [2pia + 2pia + 2sigmas] rearrangement, respectively. The maximum quantum yield for the formation of cyclophane 5 (0.69) and the upper-limit efficiency for the formation of polycycle 7 (0.31) were determined by laser photolysis techniques. For BP-sensitized photolysis of photoisomer 6, oxetane 8, in addition to triplet cyclophane 5 and polycycle 7, was formed by a Paterno-Buchi reaction. The quenching rate constant (k(q)) of triplet BP by photoisomer 6 (3.4 x 10(8) dm(3) mol(-)(1) s(-)(1)) was found to be 1 order of magnitude smaller than that for XT (5.0 x 10(9) dm(3) mol(-)(1) s(-)(1)). On the basis of the relationship between k(q) and the triplet donor-acceptor energy gap, the triplet energy level of photoisomer 6 was estimated to be approximately 71 kcal mol(-)(1). The photochemical and the photophysical processes involved in the sensitized photolyses are summarized in an energetic reaction diagram and discussed in detail.

Journal Article↗

Spectroscopic and theoretical evidence for the elusive intermediate of the photoinitiated and thermal rearrangements of photochromic spiropyrans.

Spectral properties and photochromic behavior of a series of novel 1',3',3'-trimethyl-1,2-tetramethylenespiro[7H-furo(3,2-f)-(2H-1)-benzopyran-7,2'-indolines] 1-4 have been studied. The mechanism of the photoinitiated ring-opening reaction involves the formation of an acoplanar cis-cisoid intermediate, the lifetime of which in the case of 6-(tert-butyl) derivative 4 is long enough to observe its absorption and fluorescence spectra under conditions of continuous irradiation. The occurrence of the intermediate on the reaction paths of the thermal and photochemical ring-opening processes has been also shown by the DFT and CIS calculations. The TD-B3LYP/6-31G//HF/6-31G calculated spectrum of the intermediate well matches that observed experimentally. For spiropyran 3 with a 6-NO(2) group, kinetic and activation parameters of the photoinitiated coloration and dark bleaching reactions have been determined.

Journal Article↗

Radical-induced generation of small silver particles in SPEEK/PVA polymer films and solutions: UV-Vis, EPR, and FT-IR studies.

The present study is centered on the processes involved in the photochemical generation of nanometer-sized Ag particles via illumination at 350 nm of aqueous solutions and cross linked films containing sulfonated poly(ether ether ketone) and poly(vinyl alcohol). Optical and electron paramagnetic resonance experiments, including electron nuclear double resonance data, proved conclusively that the photogenerated chromophore exhibiting a band with lambda(max) = 565 nm is an alpha-hydroxy aromatic (ketyl) radical of the polymeric ketone. This reducing species was produced by illumination of either solutions or films, but the radical lifetime extended from minutes in the fluid phase to hours in the solid. Direct evidence is presented that this long-lived chromophore reduces Ag(I), Cu(II), and Au(III) ions in solution. A rate constant of k = 1.4 x 10(3) M(-)(1) s(-)(1) was obtained for the reduction of Ag(+) by the ketyl radical from the post-irradiation formation of Ag crystallites. FTIR results confirmed that the photoprocess yielding polymeric ketyl radicals involves a reaction between the macromolecules. The photochemical oxidation of the polymeric alcohol, as well as the formation of light-absorbing macromolecular products and polyols, indicates that the sulfonated polyketone experienced transformations similar to those encountered during illumination of the benzophenone/2-propanol system.

Journal Article↗

Electron donors and acceptors in the initial steps of photosynthesis in purple bacteria: a personal account.

The discovery by Louis N. M. Duysens in the 1950s that illumination of photosynthetic purple bacteria can cause oxidation of either a bacteriochlorophyll complex (P) or a cytochrome was followed by an extended period of uncertainty as to which of these processes was the 'primary' photochemical reaction. Similar questions arose later about the roles of bacteriopheophytin (BPh) and quinones as the initial electron acceptor. This is a personal account of kinetic measurements that showed that electron transfer from P to BPh occurs in the initial step, and that the oxidized bacteriochlorophyll complex (P(+)) then oxidizes the cytochrome while the reduced BPh transfers an electron to a quinone.

Journal Article↗

Single-crystal X-ray diffraction studies of photo-induced molecular species.

This tutorial review gathers together the recent developments in single-crystal X-ray diffraction that are starting to enable one to quantify directly the nature of light-induced electronic perturbations in chemical structures. Such structural information is key to understanding many photo-activated chemical processes and physical properties, and a description of the scientific impetus behind this incipient area of structural science, from academic and industrial perspectives, is given. Photoisomerism processes, solid-state photochemical reactions and spin-cross-over magnetic transitions, that have long-lived or irreversible light-induced states, are best understood by unravelling their three-dimensional structures measured in situ in their photo-converted state. A review of steady-state laser-induced single-crystal X-ray diffraction studies conducted, to date, and the experimental methodologies used in order to realise such structures, is presented. The structural characterisation of more transient photo-induced species (down to picosecond lifetimes) is paramount to a better understanding of the materials that undergo high-speed electronic switching, which make operative much of the electronics and optics industry, since there exists an inherent relationship between the excited-state structure and the physical properties exhibited. Prime examples include excited-state structures of molecular conductors and luminescent materials with potential applications as molecular wires, light-emitting diodes, non-linear optics, triboluminescence and electroluminescence. Previously, only indirect and qualitative interpretations of the nature of these excited-states could be formulated via spectroscopic techniques, but the developments in ms-ps time-resolved laser pump, X-ray probe single-crystal diffraction techniques, described herein, are overcoming this barrier, affording results that are entirely quantitative via a three-dimensional structural representation. In this regard, a review of structures of transient species studied to date is presented along with a discussion of the key experimental parameters that are required for a successful experiment, in terms of the X-ray, laser and sample characteristics. The importance of auxiliary spectroscopic work and complementary theoretical calculations is also briefly discussed. The paper concludes with a future outlook on new possible X-ray sources that will facilitate such work and extend it to structural studies on even more ephemeral species in the future.

Journal Article↗

Photophysics and photochemistry of water-soluble, sitting-atop bis-thallium(I) 5,10,15,20-tetrakis(4-sulfonatophenyl)porphyrin.

In aqueous solutions, thallium(I) ions and 5,10,15,20-tetrakis(4-sulfonatophenyl)porphyrin form a kinetically labile metalloporphyrin of 2 : 1 composition (Tl(2)P(4-)). The formation constant of this sitting-atop (SAT) complex is relatively low (beta2/[H+]2= 3.55 x 10(3) M(-2) at pH = 7), due to the large size and rather small charge of Tl+. As a consequence of the considerably weak metal-ligand interaction in this system, the 1 : 1 species does not appear in detectable concentration. Both the absorption and the emission properties of the Tl(2)P(4-) complex are characteristic for the typical SAT metalloporphyrins. Compared to the corresponding values of the free-base porphyrin, the diminished fluorescence quantum efficiency (Qfl= 0.0131 vs. 0.056) of Tl(2)P(4-) can be accounted for by the heavy-atom effect, while the larger Stokes shift (442 vs. 282 cm(-1)) indicates a stronger distortion of the ligand plane. Both Soret- and Q-band irradiations of the Tl(2)P(4-) complex lead to the degradation of the porphyrin with quantum yields of magnitude 3 x 10(-4). The primary photochemical step in this process is ligand-to-metal charge transfer reaction, which is unusual for normal (coplanar) metalloporphyrins. In the case of SAT complexes, the kinetic lability facilitates the separation of the primary redox products, followed by an irreversible ring-opening of the oxidized porphyrin. Photoinduced electron ejection as a considerable step in the degradation mechanism could be ruled out.

Journal Article↗

Regulation of photosynthetic light harvesting involves intrathylakoid lumen pH sensing by the PsbS protein.

The biochemical, biophysical, and physiological properties of the PsbS protein were studied in relation to mutations of two symmetry-related, lumen-exposed glutamate residues, Glu-122 and Glu-226. These two glutamates are targets for protonation during lumen acidification in excess light. Mutation of PsbS did not affect xanthophyll cycle pigment conversion or pool size. Plants containing PsbS mutations of both glutamates did not have any rapidly inducible nonphotochemical quenching (qE) and had similar chlorophyll fluorescence lifetime components as npq4-1, a psbS deletion mutant. The double mutant also lacked a characteristic leaf absorbance change at 535 nm (DeltaA535), and PsbS from these plants did not bind dicyclohexylcarbodiimide (DCCD), a known inhibitor of qE. Mutation of only one of the glutamates had intermediate effects on qE, chlorophyll fluorescence lifetime component amplitudes, DCCD binding, and DeltaA535. Little if any differences were observed comparing the two single mutants, suggesting that the glutamates are chemically and functionally equivalent. Based on these results a bifacial model for the functional interaction of PsbS with photosystem II is proposed. Furthermore, based on the extent of qE inhibition in the mutants, photochemical and nonphotochemical quenching processes of photosystem II were associated with distinct chlorophyll fluorescence life-time distribution components.

Amino Acid Sequence↗